| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2735 |
|---|
| Symbol | |
|---|
| ID | 3368252 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 3320139 |
|---|
| End bp | 3321902 |
|---|
| Gene Length | 1764 bp |
|---|
| Protein Length | 587 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637653083 |
|---|
| Product | helix-turn-helix, Fis-type |
|---|
| Protein accession | YP_235812 |
|---|
| Protein GI | 66045971 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.366185 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAACC CTCACTGCGA GCTGCCCGAT CACAGCGTCC CCACCGAGCA TTTCTCGCCT
CGCGGCGACA GCAGTCAGAC GCACGCAGGC GACTCGCCAA CCGCTGAGGA ATTGACCAGT
TGCCTGTTCT TCTCGCCCGA TGATGGGCGC ATCTGGCTTA ACGACCAACG CATGATGCTG
CTGCATACTT CATCGTTCGG CACCCTGCGC CGCGAAATCA TCGAACGGCT GGGCCTGGAA
CAGGCACGCG GGATGTTCAC CCGTGCCGGG TATCTGTCTG GCGCGCGGGA CGCCCGATTG
ATTCGCGAAC GCTGGCCACA GGCTGACGCC TCGTCGGCGT TTCGTGCCGG TACGCACTTG
CATACCCTGG AAGGCATGAC CAAGGTCGAG CCGCTGCACT TCAAATTCGA CGCCGAGTCG
GGGTTCTACG AGGGGGAGTT TCTCTGGCAT CACTCGTGCG AAGCCGACGA ACATGTTGCA
GCGTATGGCA TCGGCCAGGA CCCGGTGTGC TGGACCGAAA TCGGTTACGC CACGGGCTTT
GTCAGCGGCC TGTTCGGGCA GATGGTGGTT TTCCGCGAGG TGGAATGCCG GGGCATGGGG
CATGCGAACT GCCGTGTGGT CGGCAAGACC TCGGAACAAT GGGGCGATGT CGAACGCGAC
CTGAGCTACC TGAGAGCGGT CAACTCACCT GCGCCAGTAC ACAGCGTCCC GACGCCAGCG
GCGAGCTATG AGGCAAGCCC GCCGACCGGC ACCGACCAGC CGCTGGTCGG CGCAAGCGCT
GCCTTCAATG CGGCCACCCA GGCGTTGCAA CGGGTGGCGA TGACCCCGGC AACCGTATTG
ATCAGCGGCG AGTCCGGAGT CGGCAAGGAA ATGTTCGCCC GCCAGTTGCA TCAGCTCAGC
CGCCACCGCG AAGGCCCGTT CGTTGCACTC AACTGCGCAG CCATTCCCGA CAACCTTATC
GAGGCCGAGC TGTTCGGTGT GGAGCGAGGG GCTTATACCG GGGCAACGCA TTCCAGAGCC
GGGCGTTTCG AGCGCGCCAA CGGTGGCACG CTGTTTCTGG ATGAAATCAC CTCTCTGAGC
CTTGCCGGGC AAAGCAAGCT GCTGCGCGCT TTGCAGGAAC GCGAGATCGA GCGCGTCGGC
GGGGTGCACG GCATCAAGGT CAACGTTCGA GTGGTGGCGG CGACCAATGT CGACCTGCGC
AAGGCGGTGG CCGAGGGCGA TTTCCGCGAA GACCTGTTCT ATCGCCTGAA TGTCTACCCG
ATCGCCCTGC CGCCATTGCG CGAGCGCCGC GATGACATTC CGCTGCTGAT CAATTTCTTT
CTCGGGCGCT TCTGTCAGGA GTACGGCAGG ACGCCGGCCG GATTGACCAT GCGCGCGCTG
AAGACCCTGC TGGGTTATGA CTTTGCCGGG AATGTGCGCG AATTGCAGAA CCTGATCGAG
CGCGGCCTGA TTGCCAGTGA TGAAGGCCAG GCCATAGATC TGGTGCATAT TTTCCGCAAC
GAATCGTTAC CACGGGACAC CTACTCGCTG AATCACCATG GAGCACTGCG TCAGGCATCG
ACTGCGGGCG CACAGCAGGT ACCTGCTACC TCGCTGCTGG GTACCCTTAA TCAGCCGGAT
AAGGCGTTCT CCATCGACGA GCTTGAACAG CGCCTTATCC AGGAGGCGCT GGACAAGAGC
GAAGGCAACC TGGCGGCCGC CTCGCGCTTG CTGGGCCTGA GCCGCGCCCA GTTTGCCTAC
CGCCTGAAAA AGCGTCAGCC CTGA
|
|---|
| Protein sequence | MNNPHCELPD HSVPTEHFSP RGDSSQTHAG DSPTAEELTS CLFFSPDDGR IWLNDQRMML
LHTSSFGTLR REIIERLGLE QARGMFTRAG YLSGARDARL IRERWPQADA SSAFRAGTHL
HTLEGMTKVE PLHFKFDAES GFYEGEFLWH HSCEADEHVA AYGIGQDPVC WTEIGYATGF
VSGLFGQMVV FREVECRGMG HANCRVVGKT SEQWGDVERD LSYLRAVNSP APVHSVPTPA
ASYEASPPTG TDQPLVGASA AFNAATQALQ RVAMTPATVL ISGESGVGKE MFARQLHQLS
RHREGPFVAL NCAAIPDNLI EAELFGVERG AYTGATHSRA GRFERANGGT LFLDEITSLS
LAGQSKLLRA LQEREIERVG GVHGIKVNVR VVAATNVDLR KAVAEGDFRE DLFYRLNVYP
IALPPLRERR DDIPLLINFF LGRFCQEYGR TPAGLTMRAL KTLLGYDFAG NVRELQNLIE
RGLIASDEGQ AIDLVHIFRN ESLPRDTYSL NHHGALRQAS TAGAQQVPAT SLLGTLNQPD
KAFSIDELEQ RLIQEALDKS EGNLAAASRL LGLSRAQFAY RLKKRQP
|
|---|
| |