| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2432 |
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| Symbol | |
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| ID | 3367949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 2814290 |
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| End bp | 2817199 |
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| Gene Length | 2910 bp |
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| Protein Length | 969 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637652780 |
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| Product | GGDEF |
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| Protein accession | YP_235509 |
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| Protein GI | 66045668 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00712215 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCATCTGG ATGCTTCCAT GACAGTCTCA CTTCTGGCCA CGGGCCTTTG CCCAAGCGTA
GCTTGCACCT CAATTGCTCC CGGCAGCGCG TTGCCAGCCA CCCGCGACCG ATTCTCCTGT
CACGCCTCCA TCGAAGCACT GATCAGCGCC GCAAGGCAGC AGACAGGAGC CATTGCCTGG
GCTGCATACG CCGCTGGTGA ACTGAAATGC CTGCTCGGGC AGGGCGACGA AAGCGTTGTC
TGGCCGACAC ATATCGCTGC TGAAGATTTC GAGGCGTATT GCACTCAGTT GCAGCTGCAT
TGCCGTGTCG CGGGGCAGGG CGAGGGCGTG CTGGGGTGGG TGTTGGCACC GATGGCTGAA
AAAGACCACC CCTTGCTGTT GGATCTGGCT GTCAGGCTGG GCTCGCTGTT GCAGACCGCG
GCATTGATCC GCGCGCAGAA CACTCAGCGC GTTCTGTACG AAATCAGCTT GCTGGCCAGT
ACTACGCTGG ACCGCGGCGC TTTTCTGCAA GGCATTCATG AGCAACTCGG GACCCTGATC
GATGCCGAGA ACTTCTACGT TGCGCTGTAT GACCGGCAAA GCGGCAAGAT CACCTACCCT
TATTACATTG ACCGCTTCGA TGACGAAGCG ATGGCACATG AGACGTTCGA GTTTATCGAC
GCTGACCGGA TGTCGCTCAC CGGGTATGTC TTGAGCAGCG GGCAGCCGTT GTTTCTCGAT
GCCGCCTGCA TCGAACAGGC CAAAGCTGAA AACCGGTTTT ATTGCGTTGG ACGTCTACCT
GAGTTCTGGA TGGGCGCGCC TTTGAAAAAT GCATCGGACG ACGTCTTTGG CATGGTCGCG
ATGCAGGTTT ATGACGTATC TCGTGTCTAC AGTGCCCAGG ATCGTGCGTT GTTCGCCGTG
GTATCGCGCC ATGTGGCCAT GGCATTGGAC CGGCAGTTGC ACCGCACTGA CCTGGAGCAG
GTGGTGGCCC TGCGCACGCA ACAGCTTTCT GCAGCCAACG ATGCATTGCG TCAGGAAGTC
AGGGATCGCG AGCGCGCCGA GCATCTGCAG AATGCGTTGT TCCAGATTGC CGAGCTTTCC
AGTCAGCCCG GTGACATGAA CGAGCTTTTC CGCAGCCTGC ACATGATCGT CGGCGAGCTG
CTGGTGGCGC TCAATTTCTA CATCGCGCTT TACGACAGTG CGACGGGCGA AGTGACCTTT
CCGTACTACA TTGACGAGTT CAAGCCCGCG CCGCCGCGCT CACGACGCGG GCAGCGGGGG
TTTACCGAAT ATGTGATAGG CCAGCGGCGA CCGTGCCTGA TCGATTACGA GGAAGCTCGC
AGGCTGGAAG GCCTTGGCGA GATCGAGGTA CAGCGACAAT CCGGTCGTTG CTCTTCATGG
CTGGGCATTC CGCTGTTCGA CGGCGGGCAG GTTCGCGGCG TGCTGGTGGT GCAGAGTTAT
TCCAAGGATG TGAGCTATAC CTTGCGCGAT CAGGAGCTGC TGACCTTCGT TTCTCGCCAC
ATCGATACGG CACTGTCCCG GCGCAGCGCG GCAGAAGCGA TCCATACCGC CAATGTTCTG
CTTGAAGCCA GGGTTCGAGA CAGGACCCGT GAGCTGGACC GGGCCAACGC CAGGCTGCAG
CACGAAAACT CCCATGACTC ACTGACCGGG CTGCCCAATC GCAGCCATTT GCAATATCGC
CTGAGGCAGG CCTGGCAGGA CTTCTGCCGC AACGGCCAGC AAGTGATTGT CATGTTCATC
GATCTGGATC GCTTCAAGAT GATCAATGAC AGCCTTGGTC ATCACTGTGG CGACATCCTT
CTGGTGCAGG CCGCCGAACG CCTGCGCAGT TGCATGCGCG AAAGGGACCT GCTGGCGCGG
CTGGGCGGTG ACGAGTTCGC CGTGTTGAGC ATCGACACGC CGTTGCAGAC CGGCACGGAG
ATCGCTCAGC GAATACTGAC CGCATTCGAG CAGCCGTTCG TGATCGATGA TCACACGGTT
TTCTCTTCCT GCAGTATTGG TGTGGTGGGG GCTGACATCC GCTTCCATCA GGAGCCGGCT
GACCTGCTGC GCGATGCCGA TACCGCCATG TACCGGGTCA AGAACGGTGG GCGGGACAGC
TTCGCGGTGT TCAATCAGGC GTTGCGCCGC GAGGTGTCGG ATCAGGTCGA GCAGGAGGGT
GCGTTGCGCA CGGCGCTGAA ACGTACGGAT CAGTTGATTC CCTATTTTCA GCCGGTGATC
TGCGTCAATA GCGGAAAGTT GCTGGCGTTC GAGGCGTTGA TCCGCTGGTG CATGCCGGAT
GGACGCATCG TCGGGCCAGA GAGCTTTCTG CCTGCGCTCG AGGGGCTGCG CCTGATTGGC
CGTCTGGACC TGTACATGCT CAGGCGTGTG GTTTCCATTC TGGCGCAACC CGAGAACAGT
CATTGGCCGC CCGTGCACGT GAACTGTTCG AGCTACAGCA TCACCCGTCC GGCGTTCGCC
GCAGAAGTAC TGGCACTGCT TGCCGAGCAG AATGTTGCGC CTGAACGTCT GTGTCTGGAA
CTCACCGAAG GCGCACTGGT GGCCGATCCC GAGCAGGCAC GTCTGTCGAT GAAGCTCCTC
GCCGAGCACG GCATGTCGGT CATGCTCGAC GATTTCGGCG CGGGCTTCTC TTCGCTCAGC
TACGTGCACC AGTACCATTT CAGCGGTTTG AAAATCGACA AGTCGTTTAT CTTTGGCTTG
ACCTCCAGTG TGCGCAGCCG CGCCATTGTG CGTGCCATTG TGCGCATGGC CGAATCCCTC
GATCTGACCG TGGTTGCCGA AGGGGTCGAG GATCGAGAAA CGCTTGAGTT GCTGCGCGAG
ATCGGCGCCA CGCAGGCGCA GGGCTACTAC TTCTCCGAGC CGCTGCCGAT TGAGCTGTTG
GATATCAACA CCGGTCTTGC AGCAGGCTGA
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| Protein sequence | MHLDASMTVS LLATGLCPSV ACTSIAPGSA LPATRDRFSC HASIEALISA ARQQTGAIAW
AAYAAGELKC LLGQGDESVV WPTHIAAEDF EAYCTQLQLH CRVAGQGEGV LGWVLAPMAE
KDHPLLLDLA VRLGSLLQTA ALIRAQNTQR VLYEISLLAS TTLDRGAFLQ GIHEQLGTLI
DAENFYVALY DRQSGKITYP YYIDRFDDEA MAHETFEFID ADRMSLTGYV LSSGQPLFLD
AACIEQAKAE NRFYCVGRLP EFWMGAPLKN ASDDVFGMVA MQVYDVSRVY SAQDRALFAV
VSRHVAMALD RQLHRTDLEQ VVALRTQQLS AANDALRQEV RDRERAEHLQ NALFQIAELS
SQPGDMNELF RSLHMIVGEL LVALNFYIAL YDSATGEVTF PYYIDEFKPA PPRSRRGQRG
FTEYVIGQRR PCLIDYEEAR RLEGLGEIEV QRQSGRCSSW LGIPLFDGGQ VRGVLVVQSY
SKDVSYTLRD QELLTFVSRH IDTALSRRSA AEAIHTANVL LEARVRDRTR ELDRANARLQ
HENSHDSLTG LPNRSHLQYR LRQAWQDFCR NGQQVIVMFI DLDRFKMIND SLGHHCGDIL
LVQAAERLRS CMRERDLLAR LGGDEFAVLS IDTPLQTGTE IAQRILTAFE QPFVIDDHTV
FSSCSIGVVG ADIRFHQEPA DLLRDADTAM YRVKNGGRDS FAVFNQALRR EVSDQVEQEG
ALRTALKRTD QLIPYFQPVI CVNSGKLLAF EALIRWCMPD GRIVGPESFL PALEGLRLIG
RLDLYMLRRV VSILAQPENS HWPPVHVNCS SYSITRPAFA AEVLALLAEQ NVAPERLCLE
LTEGALVADP EQARLSMKLL AEHGMSVMLD DFGAGFSSLS YVHQYHFSGL KIDKSFIFGL
TSSVRSRAIV RAIVRMAESL DLTVVAEGVE DRETLELLRE IGATQAQGYY FSEPLPIELL
DINTGLAAG
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