| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2133 |
|---|
| Symbol | |
|---|
| ID | 3367647 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 2493154 |
|---|
| End bp | 2494095 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637652482 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_235214 |
|---|
| Protein GI | 66045373 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.112549 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATAATCC ACGGCCAGCC GCTCCAGGCT TACACGAGTT CGAGTCCCCG CATGTCCGAG
TCCGTCTTCA GCGCCGCACA GCAGCAAGCC AGTACGTTGT ATCTGCCACC CGGCTCGTGG
GCCACGGTGC TCGATTGCCT GTGCGCGAAA TTTCCGGCCA TCAGTCGTGA ACAATGGCTG
GATCGTTTTG CTCGCGGCCG GGTGCTGGAC GAAAACGGCA AGGCCATCAC GCCTGATCTG
GCGTATCGCG AGGGGCTGCG GGTTCACTAC TTTCGTGAGG TTGCCAACGA AACGCCGATC
CCCGTGGTTG AAACGATCCT CTACGCCGAC GAGCATCTGG TGGTGGCTGA CAAGCCGCAC
TTCCTCCCGG TGACACCCGC AGGCGAGTAC GTCGAACAAA CCTTGCTGCG CCGCTTGATC
CATCGTCTGG ACAATCCTGA TATGGTGCCG CTGCACCGCA TCGACCGGCA CACCGCAGGG
CTGGTGCTGT TTTCCGCCAA CCGGCAGACG CGCTCGGCTT ATCAGGCCTT GTTTCCCACC
CGGCGCATCG ACAAGTTTTA CCAAGCCATT GCGCCAGCGC TGCCGGGGCT GGCGTTTCCG
CGTCTGCACG AGAGCCGTCT GGTCGAGGGC GAACCGTTCT TTCGCATGCA GGAAGGTATC
GGCGCGAGCA ACACCCGCAC GCAGATCGAG GTGCTCGAAC GGCAGGATAA ATTGTGGCGT
TACGGGCTTT ACCCGGTGAC CGGCAAAAAG CATCAGCTGC GTGTACACAT GGCTGCACTG
GGCGCTGCCA TCTGCAACGA CCCGTTTTAC CCGGACGTGG TGAAAGACCC GGTGGACGAC
TATCAAAATC CTTTGAAGCT GCTGGCCAGC AGCTTGCGCT TCGTTGATCC GCTCAGCGGC
GAGCAGCGCC ACTTCGAGAG CTTGTTGACG CTCGACTGGT AG
|
|---|
| Protein sequence | MIIHGQPLQA YTSSSPRMSE SVFSAAQQQA STLYLPPGSW ATVLDCLCAK FPAISREQWL
DRFARGRVLD ENGKAITPDL AYREGLRVHY FREVANETPI PVVETILYAD EHLVVADKPH
FLPVTPAGEY VEQTLLRRLI HRLDNPDMVP LHRIDRHTAG LVLFSANRQT RSAYQALFPT
RRIDKFYQAI APALPGLAFP RLHESRLVEG EPFFRMQEGI GASNTRTQIE VLERQDKLWR
YGLYPVTGKK HQLRVHMAAL GAAICNDPFY PDVVKDPVDD YQNPLKLLAS SLRFVDPLSG
EQRHFESLLT LDW
|
|---|
| |