| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2008 |
|---|
| Symbol | sdhB |
|---|
| ID | 3367522 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 2328697 |
|---|
| End bp | 2329401 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637652357 |
|---|
| Product | succinate dehydrogenase iron-sulfur subunit |
|---|
| Protein accession | YP_235089 |
|---|
| Protein GI | 66045248 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0479] Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit |
|---|
| TIGRFAM ID | [TIGR00384] succinate dehydrogenase and fumarate reductase iron-sulfur protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.816592 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCAAG TCAGTGTTTA TCGTTACAAC CCTGATCAGG ACGCTGCACC ATTCATGCAG
GAGTTTCAGG TCGATACCGG TGGCAAGGAC CTGATGGTGC TGGACGTGCT GGCCTTGGTC
AAAGAGCAGG ATGAAGGCTT TTCGTACCGT CGCTCGTGCC GTGAAGGCGT GTGCGGTTCC
GACGGCATGA ACATCAACGG CAAGAACGGC CTGGCCTGCA TCACGCCGCT GTCGGCTGTC
GTTGCCAAGA ACAAGCTGAT CGTACGTCCG TTGCCGGGTT TGCCGGTTAT CCGTGACCTG
GTCGTCGATA TGAGCATCTT CTACAAGCAG TACGAGAAGG TGAAGCCGTT CCTGCAGAAC
GACACGCCGG CTCCGGCCAT CGAACGTCTG CAAACGCCGG AAGAGCGCGA AAAGCTCGAT
GGTCTGTACG AGTGCATCCT GTGCGCTTGC TGCTCGACTT CCTGCCCGTC CTTCTGGTGG
AACCCCGACA AGTTCCTGGG TCCTGCTGCA CTGCTGCAAG CCTACCGTTT CCTGGCTGAC
AGCCGTGATA CTCGCACCAG TGAGCGTCTG GCTTCGCTTG ATGATCCGTT CAGCGTATTC
CGCTGCCGCG GCATCATGAA CTGCGTCAAC GTCTGTCCGA AGGGCCTTAA CCCAACCAAG
GCTATCGGTC ACGTGCGCAA TATGTTGTTG CAGAACGGCG TCTGA
|
|---|
| Protein sequence | MLQVSVYRYN PDQDAAPFMQ EFQVDTGGKD LMVLDVLALV KEQDEGFSYR RSCREGVCGS
DGMNINGKNG LACITPLSAV VAKNKLIVRP LPGLPVIRDL VVDMSIFYKQ YEKVKPFLQN
DTPAPAIERL QTPEEREKLD GLYECILCAC CSTSCPSFWW NPDKFLGPAA LLQAYRFLAD
SRDTRTSERL ASLDDPFSVF RCRGIMNCVN VCPKGLNPTK AIGHVRNMLL QNGV
|
|---|
| |