| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1819 |
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| Symbol | ligA |
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| ID | 3367327 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 2097011 |
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| End bp | 2099374 |
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| Gene Length | 2364 bp |
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| Protein Length | 787 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637652167 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_234904 |
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| Protein GI | 66045063 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.386277 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGCCG TCGAAACCCG AATCCTGGAA CTGCGTGCAG AGCTGGATCA GCACAACTAC
CGCTACCACG TTCTGGATGA ACCGAGCATT CCGGATGTCG AGTACGACCG CCTGTTTCAC
GAGCTCAAGG CCCTGGAGGC GGAAAACCCC CATCTGGTCA CCCCTGATTC GCCGACGCAG
CGGGTCGGAA GCGCGGCCTT GTCGGCGTTC ACCCAGGTGC GTCACGAAAT GCCGATGCTC
AGCCTGGGCA ACGCGTTCGA AGAAAACGAC ATGCTCGAAT TCGATCGGCG GGTCACCGAG
GGGCTGGATC TGCCGGCCGG GGACCTGTTT GGCGAAGGCG GCAAGGTGCA GTACAGCTGC
GAGCCCAAGC TGGACGGTCT GGCCGTCAGC CTGCTGTATC GCGACGGTGC GCTGGTGCGG
GGCGCGACAC GCGGCGACGG AACCACCGGC GAAGACATCA GTGTCAACGT GCGCACAGTA
CGCAACATCC CGCTCAAGCT GCAGGGCAAG GGCTGGCCGG ATGTGCTGGA AGTGCGCGGT
GAAGTGTTCA TGTCCAAGGC CGGTTTCGAG CGGCTTAACG CCAGCCAGCT GGAAATCGGC
GGCAAGACCT TCGCCAACCC GCGCAACGCA GCCGCAGGCA GCCTGCGTCA GCTGGATTCC
AAGATCACGG CCAACCGGCC GCTGGAGTTC TGCTGCTATG GTCTGGGCCA GACGTCGGCG
GAAATCGCCG ACACTCACAT CGGCGTGCTT GAAGCGCTGA AAAAATGGGG CATGCCGGTC
AGTCGCGAGC TGAAACTGGC GAATGGCGTC GAGGAGTGCC TGGCCTATTA CCGCGATATC
GGTGAGCGGC GCCTGACGCT GACTTACGAG ATCGACGGTG TAGTGTTCAA GGTCAACAAC
CTGGCAGCGC AGCGCGAACT GGGCTTCCGC GCCCGTGAGC CGCGCTGGGC GATTGCTCAT
AAATTCCCCG CCATGGAAGA GCTGACCGAA CTGCTGGATG TCGAGTTCCA GGTGGGCCGT
ACCGGCGCAG TGACGCCGGT CGCGCGGCTC AAGCCGGTCA AGGTGGCAGG CGTCATGGTC
GCCAATGCCA CGCTGCATAA CATGGACGAA GTGGCGCGGC TCGGCCTGAT GATTGGCGAC
ACGGTGATCA TCCGGCGTGC CGGTGACGTG ATTCCGCAGG TGGTGCAGGT GGTTGCCGAG
CGCCGCCCCG AGAATGCCAG GGCAGTGCAG GTTCCGCAGA CCTGCCCGGT GTGCGGCTCG
CATGTCGAGC GCACGCAACT GATCAAGCGC AGCAAAGGCA AGGAAACCGT CACCGAAGGC
GCAGTGTATC GCTGTGTCGG CCGTCTGGCC TGCGGTGCGC AACTCAAGCA GGCGATCATC
CATTACGTGT CGCGTCGCGC CATGGACATC GAAGGGCTGG GTGACAAAAC CATTGAGCAA
CTGGTCGATG AGAAACTCAT CGGCTCGCCT GCCGATCTGT ACAAGCTGAA ATACGAACAG
ATCATCGACC TCGAAGGCTT TGCTGAAATC TCCAGCAACA AGCTGCTCAA GGCCATCGCC
GACAGCCGAC AGCCGACCCT GGCGCGCTTC ATTTATGCGC TGGGCATTCC CGATGTGGGT
GAAGAGACGG CCAAGGTCCT GGCGCGTTCG CTGGCTTCGC TGGAGCGTGT CAAACAGGCC
TTGCCGGAAG TCTTGACCTA CCTGCCGGAT GTTGGCCTGG AAGTCGCTTA CGAGATTCGC
AGCTTCTTCG AGGATGAGCA CAACCGTAGC GTCATCGATG CGCTGCTCGG TGAATGCGGT
CTGCAATTGC AGGATCAGGG CGAGCTGGGC GCCGAGTTCG CGGCCAGCAC CACGCTGGAA
GGGCTGATCG ACAAACTGCA CATTCCGTCG GTAGGACCGG GTGCTGCGCA GAAGCTGGCG
GACCGGTTCG GTACGCTGGA GGCCATCATC AGCGCCGACT GGCTGGACAT GCGTCAGGCA
CTGCCGGAGA AACAGGCCAA GTCGGTTCGT GACTTCTTCG ACGACAGCGC AAACGCAGAG
CGCGCCCGCG CCATCGAAGC CCAGCTCAAG GACTTCGGCA TGCACTGGCG CAGCGAGAAA
AAAACCGTCG AAGGCTTGCC GCTGGCCGGG CAGACCTGGG TGCTGACCGG CTCGCTGGAG
CGCATGAGCC GCGATGTCGC CAAGGAAAAA CTCGAAAGCC TCGGTGCCAA GGTGTCCGGC
TCGGTCTCGG CCAAGACCCA CACCGTGGTG GCGGGGCCGG GTGCCGGCTC GAAACTGACC
AAGGCCAACG AACTGGGCCT CACCGTGCTG GACGAAGATG CACTGCTCAA ACGCCTGATC
GAGCTGGGCG TGGCGGTTGA TTGA
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| Protein sequence | MKAVETRILE LRAELDQHNY RYHVLDEPSI PDVEYDRLFH ELKALEAENP HLVTPDSPTQ
RVGSAALSAF TQVRHEMPML SLGNAFEEND MLEFDRRVTE GLDLPAGDLF GEGGKVQYSC
EPKLDGLAVS LLYRDGALVR GATRGDGTTG EDISVNVRTV RNIPLKLQGK GWPDVLEVRG
EVFMSKAGFE RLNASQLEIG GKTFANPRNA AAGSLRQLDS KITANRPLEF CCYGLGQTSA
EIADTHIGVL EALKKWGMPV SRELKLANGV EECLAYYRDI GERRLTLTYE IDGVVFKVNN
LAAQRELGFR AREPRWAIAH KFPAMEELTE LLDVEFQVGR TGAVTPVARL KPVKVAGVMV
ANATLHNMDE VARLGLMIGD TVIIRRAGDV IPQVVQVVAE RRPENARAVQ VPQTCPVCGS
HVERTQLIKR SKGKETVTEG AVYRCVGRLA CGAQLKQAII HYVSRRAMDI EGLGDKTIEQ
LVDEKLIGSP ADLYKLKYEQ IIDLEGFAEI SSNKLLKAIA DSRQPTLARF IYALGIPDVG
EETAKVLARS LASLERVKQA LPEVLTYLPD VGLEVAYEIR SFFEDEHNRS VIDALLGECG
LQLQDQGELG AEFAASTTLE GLIDKLHIPS VGPGAAQKLA DRFGTLEAII SADWLDMRQA
LPEKQAKSVR DFFDDSANAE RARAIEAQLK DFGMHWRSEK KTVEGLPLAG QTWVLTGSLE
RMSRDVAKEK LESLGAKVSG SVSAKTHTVV AGPGAGSKLT KANELGLTVL DEDALLKRLI
ELGVAVD
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