Gene Psyr_1804 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1804 
Symbol 
ID3367312 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp2077457 
End bp2078242 
Gene Length786 bp 
Protein Length261 aa 
Translation table11 
GC content55% 
IMG OID637652152 
Producthypothetical protein 
Protein accessionYP_234889 
Protein GI66045048 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3248] Nucleoside-binding outer membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0626239 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.487257 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCGTA CGATTTCCAG TGCATTACTG GCCAGCAGTC TGCTGGCTGC TGCACCCGCC 
ATGGCAGGGG ATATTTTCCA GTGGCAGAGT AATAGCCTGA CCTATCTCAA TGGACGAGAC
TTTGCTGTCA ACCCGGAAAA TCAGCAGACC TTTACCTTTG AGCACGCGGA CAGCTGGAAG
TACGGCGACA ACTTCTTCTT CGTCGACAAG ATCTTCTACA ACGGCAAGAA AGACGCCACC
GCTGGCGATA ACACCTATTA CGGCGAGTTC TCGCCACGCC TGTCGCTGGG CAAGATCTTC
GGCCAGAAGT TCGAGTTCGG GCCGATCAGC GATGTGCTGA TTGCCGCAAC TTACGAGTTC
GGTGAGGGCG ATAACGAGTC GTACCTGATC GGTCCGGCGT TCGACTTGAA GATTCCGGGC
TTCGACTACT TCCAGCTCAA CTTCTACCAG CGCCAGACCG AAGGCAATCG CCCGGGTGAC
GGCGTGTGGC AGATCACTCC GGTGTGGTCC TACACCATTC CGGTGGGCAA ATCGGATGTG
CTGATCGACG GTTTCATGGA CTGGGTGGTC GACAACGACA AGACCTCGCG TGGCACTTAC
CACTCCAACC TGCACTTCAA CCCGCAGATC AAGTATGACC TGGGCAAGGC ATTGAATTAC
CCGGAGCGGC AGCTGTACGT GGGTATCGAA TACGACTACT GGACCAACAA ATACGGCATC
AAGGACACCA GCTCCTTCGA CACCGATCAG AACACCGCGA GCTTGCTGGT GAAGGTGTTC
TTCTAA
 
Protein sequence
MNRTISSALL ASSLLAAAPA MAGDIFQWQS NSLTYLNGRD FAVNPENQQT FTFEHADSWK 
YGDNFFFVDK IFYNGKKDAT AGDNTYYGEF SPRLSLGKIF GQKFEFGPIS DVLIAATYEF
GEGDNESYLI GPAFDLKIPG FDYFQLNFYQ RQTEGNRPGD GVWQITPVWS YTIPVGKSDV
LIDGFMDWVV DNDKTSRGTY HSNLHFNPQI KYDLGKALNY PERQLYVGIE YDYWTNKYGI
KDTSSFDTDQ NTASLLVKVF F