| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1179 |
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| Symbol | |
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| ID | 3366673 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 1332278 |
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| End bp | 1334023 |
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| Gene Length | 1746 bp |
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| Protein Length | 581 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637651520 |
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| Product | OPT superfamily oligopeptide transporter |
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| Protein accession | YP_234271 |
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| Protein GI | 66044430 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1297] Predicted membrane protein |
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| TIGRFAM ID | [TIGR00728] oligopeptide transporters, OPT superfamily
[TIGR00733] putative oligopeptide transporter, OPT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.164863 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTTCGA CCTCACCATC GACCCCTCTT GCCAGCCCTG TCGAGCGTGA GCTCAGTCTA
CGCGCGGTGA TTACCGGGGT TGTGCTCGGT ATCCTGTTGA CGCCTTCCAA TGTGTACGCC
GGGTTGAAGA TCGGCTGGTC GTTCAACATG TCGATCATTG CGCTGTTGAT CGGTTATGCG
ATCTGGCAAG GGCTGTCGAA GCGCTCTTCC GGGCAGCTGC CGTGGACGCT GCATGAGAGC
AACATCAACC AGACTGTCGC CTCCGCCGCT GCGTCGATCA TTTCCGGCGG GCTGGTCGCA
CCGATTCCGG CTTATACCCT GCTGACGGGT CAGCAACTGG ATGCCATCCC AATGATCGCC
TGGGTCTTTT CGGTAAGCTT TCTGGGGATC TGGATTGCCT GGTATTTGCG CCCGTCACTG
CTCAATGACG CATCGCTGAA ATTCCCCGAA GGCATGGCCA CTCTGGAAAC CCTCCTGCAC
ATCTACAATC ACGGCCGTGA AGCTGCGACG CGCCTGAAGG TGCTGCTCAG TACCGCGTTG
CTGTCAGCGC TGGCCAAGTG GGTCGACACG TTCATATGGG CGTTCCCGCG CTGGTCGCCG
AGCGCTCAGT TGGAGCGCCT GACTTTTACC GCTGACCCTT CGCTGCTGCT GGTGGGGTTT
GGGGCGATTA TCGGTATTCG CGTCGGCCTG ACTCTGCTGA TCGGTGCCTT GCTGGCCTGG
GGTGGCCTGG CGCCGTGGCT GCTGGAACAG GGGCTGGTGA CGTTACCGGC CGACAGCAGC
GGCCCGCAGT TCGCCGCGCT GGTGGAATGG TTGCTGTGGC CGGGCGTGAG CCTGATGGTC
TGTTCGACGC TGGCCTCATT GGCCATCCGT CTGTGGACAC TGCACGCCTC CACCAAGGCC
AGCGGCGGGA CGCCCTGGTC AATGCCCAAG CCCGGGCCGG CCGCCGGGTT TGCGCTGGCG
ATCCTGTTGG TGGTCAGCCT GCAGGCACTG TTGTTCGGTA TCAATCTGTG GATGGCCTTG
CTGACCATTC CTCTGGCGAT CTGCCTGGCG GCCGTTGCGG CGCGAGTGGT CGGTGCCACG
GGTATTCCGC CCATCGGCGC AATCGGGCAG TTATCGCAAT TGAGCTTCGG CATCGTCGCG
CCCGGTCAGG TGCCGATCAA CCTGATGAGC GCCAACACAG CCGGCGGTTC AGCCGGGCAA
TGCACCGATT TGATGAACGA TTTCAAGGTA GGCCGGGCGA TCGGCGCCAC GCCGCGCAAG
CAATTGATTG CCCAGACACT GGGGATTTTC GTCGGCAGTA TCGTCGGGGT TCTGGCTTAT
ATGGCGCTGA TCCCGGACCC GCAATCGATG CTGCTCACCG AGGAATGGCC AGCCCCGGCG
GTGGCGACCT GGAAAGCCGT GGCGCAGACC CTGACGCACG GTCTGGATTC GCTGTCGGCG
AGCATCCGCT GGGCGATTTT CATCGGCGGT CTGGCCGGCT TGCTGCTGGG TATCCTCGAC
AGCACACTGC CCGCGCATCG CGCCCGGTAC CTGCCCAGCG CCGCAGCACT GGGCCTGGCC
TTCGTGCTTC CCGCCTCGGT GTCGTTGATG ATGGCGCTCG GTGCAGTGCT CACCTGGCTG
GTGAACTGTC GCTGGCCGTC ACTGACCGAA CGCTTTGCCA TCACCGCAGC GGCTGGCCTG
ATTGCCGGCG AGAGCATTAC CGGCGTCGGT GCATCGCTGT GGCAGATGGT TCAGAACGGC
GGGTAG
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| Protein sequence | MLSTSPSTPL ASPVERELSL RAVITGVVLG ILLTPSNVYA GLKIGWSFNM SIIALLIGYA
IWQGLSKRSS GQLPWTLHES NINQTVASAA ASIISGGLVA PIPAYTLLTG QQLDAIPMIA
WVFSVSFLGI WIAWYLRPSL LNDASLKFPE GMATLETLLH IYNHGREAAT RLKVLLSTAL
LSALAKWVDT FIWAFPRWSP SAQLERLTFT ADPSLLLVGF GAIIGIRVGL TLLIGALLAW
GGLAPWLLEQ GLVTLPADSS GPQFAALVEW LLWPGVSLMV CSTLASLAIR LWTLHASTKA
SGGTPWSMPK PGPAAGFALA ILLVVSLQAL LFGINLWMAL LTIPLAICLA AVAARVVGAT
GIPPIGAIGQ LSQLSFGIVA PGQVPINLMS ANTAGGSAGQ CTDLMNDFKV GRAIGATPRK
QLIAQTLGIF VGSIVGVLAY MALIPDPQSM LLTEEWPAPA VATWKAVAQT LTHGLDSLSA
SIRWAIFIGG LAGLLLGILD STLPAHRARY LPSAAALGLA FVLPASVSLM MALGAVLTWL
VNCRWPSLTE RFAITAAAGL IAGESITGVG ASLWQMVQNG G
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