Gene Psyr_0601 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_0601 
Symbol 
ID3366079 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp690101 
End bp690817 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content59% 
IMG OID637650943 
ProductABC transporter 
Protein accessionYP_233709 
Protein GI66043868 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0410] ABC-type branched-chain amino acid transport systems, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.190896 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.541783 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAAGC CGATCCTCGA ACTGAAAGAG ATCGATGTGT TTTACGGGCC GATTCAGGCC 
CTGAAGAAAG TCTCGCTGCA CATCAATGAG GGTGAAACGG TGAGCCTGAT CGGCTCCAAC
GGCGCGGGCA AGTCCACGCT GCTGATGTCG ATCTTCGGTC AGCCGCGCGC GGCCAGCGGG
CAGATCATCT ATCAGGGCAC CGACATCACC CAGAAGTCCT CGCATTACAT CGCCTCCAAC
GGCATTGCGC AGTCGCCGGA GGGACGGCGG GTCTTTCCCG ACATGTCGGT CGAAGAAAAC
CTGATGATGG GCACCATTCC GATTGGCGAC AAGCATTCGG CCGAAGACAT GCAGCGCATG
TTCGAGCTGT TCCCCAGGCT CAAGGAGCGC CGCAATCAGC GCGCCATGAC CATGTCCGGA
GGCGAGCAGC AAATGCTCGC CATCGCCCGT GCGCTGATGA GTCGTCCGAA ATTGCTGCTG
CTCGATGAGC CAAGCCTGGG TCTGGCCCCG ATCATCGTCA AACAGATCTT CTCGACCCTG
CGTGAACTGG CAGCCACGGG CATGACGATA TTTCTGGTCG AGCAGAACGC CAACCATGCG
CTCAAGCTGT CCGACCGGGC CTATGTCATG GTCAATGGCG AGATTCGCCT GTCCGGCACG
GGGCAGGAAT TGCTGGTAAA TGAAGAGGTA AGGAACGCTT ATCTGGGCGG GCACTGA
 
Protein sequence
MSKPILELKE IDVFYGPIQA LKKVSLHINE GETVSLIGSN GAGKSTLLMS IFGQPRAASG 
QIIYQGTDIT QKSSHYIASN GIAQSPEGRR VFPDMSVEEN LMMGTIPIGD KHSAEDMQRM
FELFPRLKER RNQRAMTMSG GEQQMLAIAR ALMSRPKLLL LDEPSLGLAP IIVKQIFSTL
RELAATGMTI FLVEQNANHA LKLSDRAYVM VNGEIRLSGT GQELLVNEEV RNAYLGGH