| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1925 |
|---|
| Symbol | psd |
|---|
| ID | 3515895 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | + |
|---|
| Start bp | 2373065 |
|---|
| End bp | 2373898 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637670623 |
|---|
| Product | phosphatidylserine decarboxylase |
|---|
| Protein accession | YP_265207 |
|---|
| Protein GI | 71066480 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0688] Phosphatidylserine decarboxylase |
|---|
| TIGRFAM ID | [TIGR00163] phosphatidylserine decarboxylase precursor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.0944439 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00451587 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATGTAT TTACTACCTT ACAGCAATTT GTGCCGCAGC AAAAAATCAG CAAAGTCGCT
GGGCGCTTAG CCGCCAGTCG CCATCCTTGG GTCAAGCGTA CTTTTATTCG CAGTTTTGCC
AAAGCGTATG ATGTTAGCTT AGATGAATAT GAGCGTCAAA GCCTAAACGC TTATGAGAGC
TTTAATGATT TCTTTACTCG TGAGCTCCAA GACAATGCCC GTATTATCGA TGCCAGTATC
AACGGTATTG TCAGTCCTGC GGATGGGATG ATATCTCAGC TTGGACAAAT CCATGACCAT
AAGCTACTGC AAGCAAAAGG TCGTGACTAT GATATCGGTC AGTTATTGGC TGACAGTGCC
GACGGAGATT ATTTTGCTGA TGGTAGTTTT GCCACGGTCT ATCTTGCTCC AAGCAACTAT
CACCGTGTTC ATATGCCATT TGACGGTACC CTGATTAAAA CCCGTTACGT ACCAGGTACG
CTGTTTTCGG TCAATAATAC CACGGCTGCT AATGTACCTG ATTTGTTTGC TCGCAACGAA
CGCCTAGTTT GTCTGTTTGA TACCGCTTAC GGCAAAGCGG CTGTGGTCAT GGTCGGTGCG
ATGATTGTCG CTGGGATTGA AACGGTTGCG ACGGGTAAAA TTAGCCGTAC CGATGACATT
CAAGAAGCGG ATCATGATAT GAGCTTTAAG AAAGGCGATG AGCTTGGTCG TTTTTATCTG
GGCTCAACGG CGATTGTGGT GCTACCAAAA GCGGCAAAAA CTGAGTGGCA AGCCACCATG
CAGCACGGCT CAACAGTGCA AATGGGTCAA CTATTAGCCA ACGCTAAAAT CTAA
|
|---|
| Protein sequence | MNVFTTLQQF VPQQKISKVA GRLAASRHPW VKRTFIRSFA KAYDVSLDEY ERQSLNAYES
FNDFFTRELQ DNARIIDASI NGIVSPADGM ISQLGQIHDH KLLQAKGRDY DIGQLLADSA
DGDYFADGSF ATVYLAPSNY HRVHMPFDGT LIKTRYVPGT LFSVNNTTAA NVPDLFARNE
RLVCLFDTAY GKAAVVMVGA MIVAGIETVA TGKISRTDDI QEADHDMSFK KGDELGRFYL
GSTAIVVLPK AAKTEWQATM QHGSTVQMGQ LLANAKI
|
|---|
| |