| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1886 |
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| Symbol | rpoC |
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| ID | 3515855 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter arcticus 273-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007204 |
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| Strand | - |
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| Start bp | 2324839 |
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| End bp | 2329059 |
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| Gene Length | 4221 bp |
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| Protein Length | 1406 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637670583 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_265168 |
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| Protein GI | 71066441 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.315745 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAAGATT TACTCGATAT CATGCAAAGC CCTACCAGCA ATGGTAACCA TGAGTTTGAT
AGCATCCAAA TTACCTTGGC ATCGCCTGAC GTTATTAAGT CGTGGTCGCA TGGTGAAGTA
AAAAAACCTG AAACCATTAA CTATCGTACG TTCAAACCTG AACGTGATGG TCTTTTTTGT
GCCAAAATTT TTGGTCCAGT AAAAGATTTT GAATGTTTAT GTGGTAAATA TAAGCGCCGT
AAATTCCAAG GCGTTATATG CGAAAAATGT GGCGTTGAAG TTACCACGGC TAAAGTTCGC
CGCGATCGCA TGGGTCATAT TGACCTAGCG AGCCCTGTTG CGCATATTTG GTTCTTAAAA
TCATTACCAA GCCGCATCGG TCTATTGCTA GATATGACGC TTCGTGATAT CGAACGCGTA
TTGTATTTTG AAAGCTATAT CGTGACTGAG CCAGGGTTGA CTTCTTTAGA GAAGTATCAA
CTGCTTGATG ATGAAGATTA TTATAAAGCG CTTGAAGAAT TCGGTGATGA ATTCACGGCC
AAGATGGGTG CTGAAGCGGT TCAAGACCTT TTAAAAGATA TCGACTTAGA TTTAGAGATT
GATGAGTTAC GTGAAGCGAT TCCGCAAACT GGTTCTGAAA CCAAGCTTAA AAAGATGTCT
AAGCGTCTTA AATTATTAGA AGCTTTCCGT AATTCTAATA ATAAGCCTGA GTGGATGGTA
ATGAATATCT TACCAGTACT ACCACCAGAT TTGCGTCCTC TAGTACCACT TGAAGGCGGT
CGTTTTGCGA CATCAGATCT TAACGATTTA TATCGCCGCG TTATTAACCG TAATAATCGT
CTAAAGCGTC TGCTTGAGCT AAGCGCTCCT GATATCATCG TACGTAACGA AAAACGTATG
TTGCAAGAAT CAGTAGATGC ATTGTTAGAC AACGGTCGCC GCGGTCGTGC GATTACTGGT
AGTAACAAGC GTCCATTGAA ATCTTTGGCT GATATGATCA AAGGTAAGCA AGGTCGTTTC
CGTCAAAACT TACTAGGTAA ACGTGTTGAT TATTCTGGTC GTTCGGTGAT CGTTGTTGGT
CCAACCTTAC GTCTACATCA GTGTGGTCTA CCGAAGAAAA TGGCACTTGA ATTGTTCAAG
CCATTTACAT ATAACAAATT ATTGTCTCAT GGCTTGGCGA CGACGATTAA AGCTGCCAAA
AAAATGGTAG AGCGTGAAGA GCCACAAGTG TGGGATATGC TGGCCATGGT TATCCGTGAG
CATCCAGTGC TGCTTAACCG TGCGCCAACG CTTCACCGTT TGGGTCTACA AGCATTTGAG
CCAGTACTAA TCGAAGGTAA AGCGATTCAG CTTCACCCTC TAGTTTGTAC CGCATTCAAC
GCTGACTTTG ATGGTGACCA AATGGCGGTA CACGTGCCAT TGACACTAGA AGCACAGCTT
GAATCACGTG CACTTATGAT GTCGACCAAC AATATCTTGT CTCCTGCTAA CGGTGAGCCA
ATCATCGTAC CATCACAAGA TGTGGTATTG GGCTTGTATT ACATCAGCCG CTCGTCAGTG
AATGCCAAAG GCGAGGGCAT GATTTTTGCC ACCGTTAATG AAGCATTGCG TGCGATTGGT
TCAAACGATT TACATGTTAA CGCCAAGATT AAAGTGCGTG TGACTGAAAC GCATATTGAT
GATGACGGCA ATCGTACTAA AGAGACGAGT ATCAAAGATA CCGTTGCTGG TCGCTTGTTA
ATCTGGAACA TCATGCCTGT TGGTATGTCG TTTGATGAAT GTAATGAAGA GATGACGAAG
AAGAATATCT CTAAATTGAT CAACTCTTGC TACCGTAAAG TGGGTGTTAA AGAAAGTGTT
ATGTTTGCTG ACCAATTGAT GTATCTTGGT TTTGCACAAG CAACACTGTC TGGTGTGTCT
ATCGGTATCG ATGACATGGT CATTCCACCA CTGAAAAAGC AAATCATCGA AGTGGCAGAA
GCAGAAGTGC GCGAGATTGA AGATCAATTT GAGCAAGGCT TTGTAACGGC TGGTGAGCGT
TATAATAAAG TGGTTGATAT CTGGTCACGT ACCAATGACA AAGTCGCCAA AGCGATGATG
GACAACTTAG CGACTGATAA AATTATCAAC GCTAAGGGTG AAGAAGAAGA GCAGAAGTCA
TTTAACTCTA TCTTTATCAT GTCAGATTCT GGTGCTCGTG GTAGTGCCGC ACAGATTCGT
CAGCTCGCTG GTATGCGTGG TTTGATGGCT AAGCCAGATG GCTCAATCAT TGAGACACCG
ATTAAGGCTA ACTTCCGTGA AGGTTTGACC GTACTGCAGT ACTTTATCTC AACGCATGGT
GCGCGTAAAG GTCTTGCGGA TACGGCACTA AAAACCGCTA ACTCAGGTTA CTTGACGCGT
CGTTTGGTTG ACGTGGCACA AGATTTGGTT ATTACCAGTG ATGATTGTGG TACTGAGCAA
GGCTTGCTCA TGAAGCCACA TATTCAAGGC GGTGAAATCA TTGAGAAGTT GGGCGAGCTA
GTACTAGGTC GTGTAACGGC ACGTGATGTT ACTTATAACG ATGATGCTGA AAAAATCTTG
ATTCCAGCTG GTACTTTAAT CGATGAGCAT TGGGTTAAGG TGCTAGACAA TAACGCAATC
GATGATATTT GGGCACGTTC AGTGATTACC TGTGAGATCG AACATGGTGT TTGTTCACAG
TGTTATGGTC GTGACCTTGC TCGTGGTCAT AAAGTGAATA TCGGCGAGTC AGTCGGTGTT
ATGGCAGCGC AGTCTATCGG TGAGCCTGGT ACTCAGTTGA CCATGCGTAC TTTCCACGTT
GGTGGCGCAG CAAGTTCTGC TTCTGTGGAC AACAGCATTT CAGTTCGTAG TGCTGGTCAA
GCGCATTTTG AAAACATGAA AACTGTACAG CACACTGATG GTCACTTGGT TATCGTATCA
CGTTCAGCTG AAATCGCCTT GACCGATGAA CTTGGTCGTG AGCGTGAGCG TTATAAAGTA
CCTTATGGTT CAAGCGTCCT CATAAAAGAC GAAGAGCAGG TTGAAGGCGG TCAAACCATC
GCTAAGTGGG ATCCACACAC GCATCCTATT ATCACAGAAT TCGCGGGTAC AGCACGTTTC
AGTGAAATCA CTGATGGCTT AACTGCTACA GTAAAAGTTG ATGACGCGAC TGGTATGAGC
TCGTTTGAGA TTCTAGCGAC TCGTGACCGT TCAAGCTCAG CAAAAGACTT GCGTCCTGCG
ATTATCTTGA ACACCGACGA AGGTAAAGAA GTGATTTACT TCTTACCCGC TGAAACCATC
ATTCGCGTCA GCGACGGTGA AAAAGTAGCA GCCGGTTCGA TTCTAGGTCG TGTACCACAA
GCATCTTCAG GTACCAAAGA TATTACCGGT GGTCTGCCAC GTGTAGCCGA TTTATTCGAA
GCTCGTCGTC CAAAAGATCA CGCTATCATG GCAGAAATGA GCGGTGTCGT TAGCTTTGGT
AAAGAAACCA AAGGTAAAAA CCGCTTTATC ATTACTAATG AAGATGGCGA GATTCATGAA
GAGCTGATCC CGAAATGGCG TCAAATTAAC GTCTTTGAAA ACGAGACAGT TGCCCGTGGT
GAGGTTATTG CTGATGGTCC ACAAAATCCG CATGATATCT TACGTCTAAA AGGACAAACC
GCGCTTGCTG ATTATATCGT CAACGAAGTA CAGGACGTTT ATCGTCTGCA GGGCGTAAAA
ATCAACGATA AGCACATCGA AGTCATTATT CGTCAGATGT TGCGTAAAGT TGAGATTACG
GATGGCGGTG ATTCAAATCA CTTTAAAGGC GATCAGGTAG AATATGCTGA TATCAAAGCA
TTGAATGCTA AGCTGGAAGC GGAAGATAAA TTCCCAGTTC AGTTTGAGCG TCAATTACTT
GGTATCACCA AAGCAAGCTT GGCAACGGAA AGCTTCATCT CAGCCGCATC GTTCCAGGAA
ACCACACGTG TCCTAACGGC TGCTGCGGTT ACTGGTAAAG TGGATGAGCT ACGTGGTCTG
AAAGAAAACG TGGTGGTTGG TCGCTTAATC CCTGCTGGTA CGGGTCTTGC TTATCATAAA
GCTCGTAAAG AAAAAGCGGA GCAAAAACTG CAGGATAAAG ACTTAAATGC AGCGTTTGAT
ATGTCAGCGA CTACTGACAG TAAAGACTTT GCAAGTTTCG ATGAAGCGTT TGCTCAAGAG
CTGAATCAAG GTAATCATTA A
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| Protein sequence | MKDLLDIMQS PTSNGNHEFD SIQITLASPD VIKSWSHGEV KKPETINYRT FKPERDGLFC
AKIFGPVKDF ECLCGKYKRR KFQGVICEKC GVEVTTAKVR RDRMGHIDLA SPVAHIWFLK
SLPSRIGLLL DMTLRDIERV LYFESYIVTE PGLTSLEKYQ LLDDEDYYKA LEEFGDEFTA
KMGAEAVQDL LKDIDLDLEI DELREAIPQT GSETKLKKMS KRLKLLEAFR NSNNKPEWMV
MNILPVLPPD LRPLVPLEGG RFATSDLNDL YRRVINRNNR LKRLLELSAP DIIVRNEKRM
LQESVDALLD NGRRGRAITG SNKRPLKSLA DMIKGKQGRF RQNLLGKRVD YSGRSVIVVG
PTLRLHQCGL PKKMALELFK PFTYNKLLSH GLATTIKAAK KMVEREEPQV WDMLAMVIRE
HPVLLNRAPT LHRLGLQAFE PVLIEGKAIQ LHPLVCTAFN ADFDGDQMAV HVPLTLEAQL
ESRALMMSTN NILSPANGEP IIVPSQDVVL GLYYISRSSV NAKGEGMIFA TVNEALRAIG
SNDLHVNAKI KVRVTETHID DDGNRTKETS IKDTVAGRLL IWNIMPVGMS FDECNEEMTK
KNISKLINSC YRKVGVKESV MFADQLMYLG FAQATLSGVS IGIDDMVIPP LKKQIIEVAE
AEVREIEDQF EQGFVTAGER YNKVVDIWSR TNDKVAKAMM DNLATDKIIN AKGEEEEQKS
FNSIFIMSDS GARGSAAQIR QLAGMRGLMA KPDGSIIETP IKANFREGLT VLQYFISTHG
ARKGLADTAL KTANSGYLTR RLVDVAQDLV ITSDDCGTEQ GLLMKPHIQG GEIIEKLGEL
VLGRVTARDV TYNDDAEKIL IPAGTLIDEH WVKVLDNNAI DDIWARSVIT CEIEHGVCSQ
CYGRDLARGH KVNIGESVGV MAAQSIGEPG TQLTMRTFHV GGAASSASVD NSISVRSAGQ
AHFENMKTVQ HTDGHLVIVS RSAEIALTDE LGRERERYKV PYGSSVLIKD EEQVEGGQTI
AKWDPHTHPI ITEFAGTARF SEITDGLTAT VKVDDATGMS SFEILATRDR SSSAKDLRPA
IILNTDEGKE VIYFLPAETI IRVSDGEKVA AGSILGRVPQ ASSGTKDITG GLPRVADLFE
ARRPKDHAIM AEMSGVVSFG KETKGKNRFI ITNEDGEIHE ELIPKWRQIN VFENETVARG
EVIADGPQNP HDILRLKGQT ALADYIVNEV QDVYRLQGVK INDKHIEVII RQMLRKVEIT
DGGDSNHFKG DQVEYADIKA LNAKLEAEDK FPVQFERQLL GITKASLATE SFISAASFQE
TTRVLTAAAV TGKVDELRGL KENVVVGRLI PAGTGLAYHK ARKEKAEQKL QDKDLNAAFD
MSATTDSKDF ASFDEAFAQE LNQGNH
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