| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1467 |
|---|
| Symbol | |
|---|
| ID | 3515428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | - |
|---|
| Start bp | 1780205 |
|---|
| End bp | 1783057 |
|---|
| Gene Length | 2853 bp |
|---|
| Protein Length | 950 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637670156 |
|---|
| Product | heavy metal efflux P-type ATPase |
|---|
| Protein accession | YP_264749 |
|---|
| Protein GI | 71066022 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2217] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01525] heavy metal translocating P-type ATPase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.897361 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000055818 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAGTA TTCCATCTCC TATGCCGCCA ACATCACCGA CATTACCAAG GTCATCAAGT
ACCAATGCTT ATTATCATGA CAACTCTATA ACTGAAGGTT TAGTACTGCC ACTTGCCGGT
CACTGTTTTC ATTGTGGCGA TCCAGTGCCG CAGCCGCCGT TTCATAGCGA TATCTTGGGA
AAATCGCGTG AGATGTGCTG TATGGGCTGT CAGTTGGCTT CACAAAGCAT TGTTGAAGCG
GGACTTGAGC AATATTACCT TGACCGTTCA GAGATTAACC GGACGGCAAG CTTACCAACG
CAAATGACTC GCCTTGAGGC TTATGACCAT GATGAAATAA AGTCACAGTT TGTCTATGCT
CAAGACGGTA TGTCGGTGGC AGAGTTATCG GTCAATAATT TGCGCTGCGC CGCTTGTACT
TGGCTGATTG AATCGCGTCT CGATGAGTTG GATGGTATTG ATAGATGTCA GGTCAATTTA
ACCAATCAGC GTATGCGCGT GATATGGGAT GAGAGCAAGC TACCGATTAG CCGTATTCTT
GCGGTGATCA ATGAAATCGG TTATGAAGCC AAGCCTTATC GGCAAGATAC CCACGAAGCG
ATGTTGGCTC GTCATAACAA CCAGATGCTG ATCCGGCTTG GTATTGCTGC ACTCGGCTCG
ATGCAAGCGA TGATGTATGC GGTGGCGATT TATTTTGGTG AATATAGCGA TATGCTGATA
TTTCAGCGCG ATTTTTTGCG TTGGGTGTCG TTATTTGTCA GCACGCCGGT ATTCTTTTAT
GCCGGTGTTC CGTTTTTTAC TTCAGCATGG TCAGCGATTC GTGCCCGCCA AGTCAATATG
GATGTGCCCG TTAGTATTGC CTTGATTATC ACATTTTTTG CCAGTCTTTA TGCCACCATT
ACTGGGCAAG GGGAGACGTA TTATGACTCG GTCAGTATGT TTATTTTCTT CTTGCTGGCA
GGGCGTTATA TTGAGCACAA TGCGCGCCTA AAAGCGGCAA CCATGGCAAA TGACTTGGTG
GTGGTCGAGC CGGTATTGGT ACAGAAAATT GCTAAAGATA AAAAGGCAGC TGAAAGTATT
TTGCAGCTAT TAGAGCAAAA TAGTAGCCCA AAAACAGCAT TTGTTCATTC AGATTTGGAT
GAAGAAGATA AAGATGTTGC CAATCAGGAG AGTCAGCTAG CAACTAGTGA AATAAATAAC
CAAAGCGTCA AAAGTACTAT GCCTAATTTT ATGCAAAGCA TGGATGCCGA GGTCTATCAG
CTGACATCAC GTATTGCTAA AGAATGGCAG CAGACTCGCA ATCAGCTGTT AGCTGTCTCA
AATACAAATG ATGAGGCAAA AGAAAAGCAG ATGGTGACTG CTCATAGCTT GCAAGTGGGT
GATATCATCA TGGTTGAGGC AGGTTCTGAG ATTATCAGTG ATGGTATCTT GCTAAGTCCA
ACCGCAACCG TGTCGCAAAG TTTACTAACG GGTGAAGGCG ATTTAATCAG TAAGACTCAG
GGCGATTATA TCGTCGGCGG CGCGCAAAAT GACAGCCAAC CGTTTGAGAT GCTGGTCACA
GCGTTGCCAG AGGACAGCCA AATTGGTCTG ATTGACAGGT TGATGAATCG GGCAATGAGT
GAGAAACCAA AACTGGCACA GCAAGCAGAT AAGCTGGCAC GTTGGTTTGT TGCTCGCATT
TTAGTACTGT CTGTTTTAGT GTTTATTAGC TGGTATATCG TTGACCCAAG CCAAGCGATT
TGGGCAACAG TTGCAGTATT GGTCGCGACA TGTCCTTGTG CGTTGTCTTT GGCAACACCA
ATTGCGCTCA CTGTATCGAC TAATCGATTG GCAAGTTATG GGTTTTTAAC CACTCGTGGG
CATACGCTGC AAACGCTTGC AGAGATAACC CATGTGGCCT TTGATAAAAC AGGAACGTTG
ACCTATGGGA AACCCAATTT ACTAAATATT GAGCTGCTTA TAGATACGGC TGACATCACA
GAGGCACACG AGCAAAGAGA CGATGTATTA GCCATTGCGG CGGCATTAGA GGTGGGCAGT
CGCCATCCGA TTGCTCATGC CCTATTAACC GCTGCCTATC AGCTGCATCT GCCTGCTACA
CAAGCTTTAC AACATTATCC AGCAGGTGGC GTTGAAGCAA TGATTGATGG CGTGTTATAT
CGCATTGGTC ATGTAGATTT TGCTTTAGAT AAAACGAATA GTGATAATAT AAGTAATGAT
TTGGTCATTG ATTTGGTTGG TGCGCGCGCC AGCTCAGCGG TAGTTTTGTC TTGTCAAAAG
GATGAATCAA TAACGTGGCA AGCACTGGCA TGTTTTTACT TTAATGACAA GGTACGTGAT
AGCGCTCAGT CTATGCTCGA TAGCCTTAAA GCACTAAGTA TCGAGCCTGT CATGCTCACA
GGTGACCCAA GTCCGCAAGC CTTGGTGATG GCTGAGAATT TGGGAATGCA GTCGGCCTAT
AACGGTCTGT CGCCAATGGA CAAGGTTAAT CATATTCAGC AGTTGCAAGC TCAAGGTGCA
GTGGTATTGA TGGTTGGTGA TGGTATCAAT GATGCGCCGG TATTAGCAGC GGCAGACGTT
TCAACCTCGA TTGCTGGTGC AGCAGATTTA GCGCAAGTAT CTAGCGATAG CATTATCTTA
AACGGACAAA TCGAAGCTAT TATTGCTGCA AAACGTATTG CTGATAAAAC GAAACGTATT
ATCAAGCAAA ACTTGCGTTG GGCACTTATT TATAACGGTA GTATCTTGAT ACCAGCGGCT
TTGGGTTATG TACCGCCTTG GCTGGCTGCG ATTGGTATGT CATTAAGCTC ACTGTTTGTG
GTACTAAACG CCTTACGTCT AAAACGAGCT TAA
|
|---|
| Protein sequence | MSSIPSPMPP TSPTLPRSSS TNAYYHDNSI TEGLVLPLAG HCFHCGDPVP QPPFHSDILG
KSREMCCMGC QLASQSIVEA GLEQYYLDRS EINRTASLPT QMTRLEAYDH DEIKSQFVYA
QDGMSVAELS VNNLRCAACT WLIESRLDEL DGIDRCQVNL TNQRMRVIWD ESKLPISRIL
AVINEIGYEA KPYRQDTHEA MLARHNNQML IRLGIAALGS MQAMMYAVAI YFGEYSDMLI
FQRDFLRWVS LFVSTPVFFY AGVPFFTSAW SAIRARQVNM DVPVSIALII TFFASLYATI
TGQGETYYDS VSMFIFFLLA GRYIEHNARL KAATMANDLV VVEPVLVQKI AKDKKAAESI
LQLLEQNSSP KTAFVHSDLD EEDKDVANQE SQLATSEINN QSVKSTMPNF MQSMDAEVYQ
LTSRIAKEWQ QTRNQLLAVS NTNDEAKEKQ MVTAHSLQVG DIIMVEAGSE IISDGILLSP
TATVSQSLLT GEGDLISKTQ GDYIVGGAQN DSQPFEMLVT ALPEDSQIGL IDRLMNRAMS
EKPKLAQQAD KLARWFVARI LVLSVLVFIS WYIVDPSQAI WATVAVLVAT CPCALSLATP
IALTVSTNRL ASYGFLTTRG HTLQTLAEIT HVAFDKTGTL TYGKPNLLNI ELLIDTADIT
EAHEQRDDVL AIAAALEVGS RHPIAHALLT AAYQLHLPAT QALQHYPAGG VEAMIDGVLY
RIGHVDFALD KTNSDNISND LVIDLVGARA SSAVVLSCQK DESITWQALA CFYFNDKVRD
SAQSMLDSLK ALSIEPVMLT GDPSPQALVM AENLGMQSAY NGLSPMDKVN HIQQLQAQGA
VVLMVGDGIN DAPVLAAADV STSIAGAADL AQVSSDSIIL NGQIEAIIAA KRIADKTKRI
IKQNLRWALI YNGSILIPAA LGYVPPWLAA IGMSLSSLFV VLNALRLKRA
|
|---|
| |