Gene Psyc_1393 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyc_1393 
Symbol 
ID3515351 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter arcticus 273-4 
KingdomBacteria 
Replicon accessionNC_007204 
Strand
Start bp1685585 
End bp1686403 
Gene Length819 bp 
Protein Length272 aa 
Translation table11 
GC content43% 
IMG OID637670080 
Productsterol desaturase 
Protein accessionYP_264675 
Protein GI71065948 
COG category[I] Lipid transport and metabolism 
COG ID[COG3000] Sterol desaturase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.015069 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.782198 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAATG AAATGTGGTG GCGTTTGGGC TTTTTCTTTA GCATATTAGT CATTATGATG 
CTCATTGAGC ATAGGCATCC CGCACGTCAA TCACCGATTA AAACCAGCAC ACGTTGGTTT
GCCAATCTTG GGCTGGTATT TGCCTCTTCT TTTGTTGCCC GTTTGGCCGT TCCTATTGGG
CTGACAACGG TAGCCATTTA TCATCAAAAA AATGGTATCG GTTTATTTAA TTTAATTGAG
ATACCGAATG TCGCAGCTAT TATTTTAAGC TTCTTGTTGC TTGATATTGT CATCTACTGG
CAACATCGCT TATTTCACCG AGTGCCACTT CTCTGGCGTT TGCACCGTGT CCATCACGCT
GATGCGCATA TCGATGCCAG CACGGGGCTT AGATTTCATC CTATCGAGAT TGTCTTAAGC
ATCTTGCTCA AGCTCGTTGT CATTAGCCTG CTTGGTGTCC CAGCTATAGC GGTACTCATA
TTCGAAATTG CTTTAAATGG GCTGTCTATG TTTAATCATG CCAATATTCG CCTGCCACCA
GTGATTGAGA AGCCATTACG CTTAATTTTA GTCACGCAAG TCTTACACCG TATTCATCAT
AGCAAACGGG TCTGTGAGAC CAACTCCAAC TACGGTGTGA GTGTGACTTG GTGGGATAGG
CTCTTTGGTA GCTATAAAAG TAACGCGTCA AAACCTGACC AAGCGTTAGA TATCGGTCTA
ATAGAATATC CCGATGCCAA GCAAAATGCC TCGCTATGGG GATTACTGCT CATGCCATTT
AAAGATAAAC ATGCTATAAA TCAATCCAAC CAAAAGTAA
 
Protein sequence
MANEMWWRLG FFFSILVIMM LIEHRHPARQ SPIKTSTRWF ANLGLVFASS FVARLAVPIG 
LTTVAIYHQK NGIGLFNLIE IPNVAAIILS FLLLDIVIYW QHRLFHRVPL LWRLHRVHHA
DAHIDASTGL RFHPIEIVLS ILLKLVVISL LGVPAIAVLI FEIALNGLSM FNHANIRLPP
VIEKPLRLIL VTQVLHRIHH SKRVCETNSN YGVSVTWWDR LFGSYKSNAS KPDQALDIGL
IEYPDAKQNA SLWGLLLMPF KDKHAINQSN QK