| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_2237 |
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| Symbol | |
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| ID | 5205458 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | + |
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| Start bp | 2778598 |
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| End bp | 2780910 |
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| Gene Length | 2313 bp |
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| Protein Length | 770 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640600484 |
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| Product | ribonuclease R |
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| Protein accession | YP_001281127 |
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| Protein GI | 148654034 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTGGA ACGATCCTAA CGCACAACAA GAAGCTCAAA ACTACGAAAA TCCTATCCCA
AGCCGCTTGC TTATTTTGCA AACCTTGGCC GATCAAGGAG AGCTTACTCA CAAACAATTG
GCCCAATCTT TTGGGATTGA CAATGAAGAT CAATTTGACG CTTTAGGCAA CCGCCTAAAG
GCCATGGCCC GTGATGGCCA AGTCAACCGT GAAGGTAGAC CTTATAAATA CCGCGCTGTG
ACAAAGCAAG ATGTGGTCAC AGGTACCGTA TCAGCGCATG CCAAAGGCTT CGGCTTTTTG
GTACTTGATG ACATGCCAGA TTTGTTTTTG CATGAGAAAC AGATGCGCTG GGTATTCAAC
GGTGATACCG TTAATGCTAT CGGCACCACC ACCGATAATC GTGGCCGCAC TGAAGGGCGT
ATTGTTGAGG TTATCGATCG CCAACAGACC CACTTTATCG GTACCTTAGA AAAAGATGAT
GAAGGCTATA CCGTATCTTT GGCAAGCCCC AACAATCATC AACCGATTAC CGTTACCGAA
GACAATGTCA AGGCAGTGAA TGCCAAGCCA GGTGTTGCGG TAAAAGTCGA CATTATCGAT
TGGCCGACTC AACACGAATT TGCCACGGGT AAAATCGTTA ACGTGATGGA TGATGATAAT
GACCGTGAGG TAATTATTGA AACCACTTTG CTTAACTATG ATATCCCAAG CGAATTTGGT
GCAGGTGTTA TCAAGCAAGC CAATAGTTAT AAAGAGCCTA ACAAGAAAGA TTTGCAAGGC
CGCATTGATA TCCGCGACTT GCCAATGGTC ACCATTGATG GTGAAGATTC ACGCGACTTT
GACGATGCGG TATATGCGGA GAAGCGTCCA GGCGGTAACT ACCGTGTGGT AGTAGCCATC
GCCGATGTGA GCCATTATGT CACCCCCAAT TCAGCATTAG ACCATGAAGC CTTCGAGCGG
GGTACTTCCG TATATTTCCC ACATCATGTG GTACCAATGC TACCAGAAGT ATTGTCTAAT
GGCCTGTGTT CATTGAACCC AGGCGTTGAC CGTCTATGCA TGGTCGCCGA TATTAAGTTA
TCACGCGCCG GCAATATCAC CGGTTATGAG TTCTACCCTT CTGTGATGCA CTCTCAAGCC
CGTTTGACCT ATAACCAAGT CAATGATTAC TTTGACGGTA ATATGGAAAA TGTTCCAGAC
TCTTTAACAG GCAATAAAGA CGTTAAAAAA TCTGTCGATA CCATGCATCA GCTATACAAA
GTATTGGTTA AAAAGCGCGA AGAGCGCAAT GCGATGGAGT TTGAGACACC TGAGACTTAT
ATTAAGTTTA ATGAAGAAGG CGGCATTGAT GCCATCGTGC CACGTACCCG TGGTGACTCG
CACAAGCTGA TTGAAGAGCT TATGTTATTG GCCAACACCT GTGCTGCTAA CTTTGCCCTT
AAAAATGAGC TGCCCGTGTT ATACCGTAAT CACGATAAGC CAGATTCTGA GAAATCTCGT
ACAGTGCATG AATACGCCAA AAACTTCGGT ATCAGTTTCC CAGAGGAAAA CCCCACTCAG
GCGGACTACA AGCGGATTAT CGAAGCCACC AAAGATCGTC CAGATGCGGT GAGTATTCAC
AGCATGCTGC TGCGCTCTAT GATGCAGGCC AACTACTCAC CGGACAACAT CGGTCACTTC
GGTCTTGCTT ATGATGAATA CTCACACTTT ACCTCACCGA TTCGCCGTTA TCCTGACTTA
ATGCTGCACC GTGCTATTAA GGCCAAAGTC ACTGGTAAAA AACAACCGCA AATGGACTTT
ACGCTAGAAG AAGCCGGTCA GCAGACTTCA GATACGGAGC GCCGTGCTGA AAAAGCCTCG
CGCTTTGTTG AGAGCTGGTT AAAATGCCAC TACATGAAAG ATCATGTGGG TGAAGAGTTT
GATGGTGTGG TCACCACAGT CACCAGCTTC GGTCTATTTA TCAATTTGAC TGAATTGTTT
ATTGATGGCT TAGTGCACAT CTCAAACGTG GGTAAAGACT ACTTCGTTTA TGATGAAAAG
CAGCAGCAAC TTATCGGCCA AGACAAAGGT ATGGTCTATG GTCTAGGCGA CTTAGTACGT
ATTAAAGTGG CTGCGGTCAA CATGGACTTA TTGCAAATTG ACTTTGAGCT TATTGCCAAG
CTTAAAGCCA GCGCCATGAA CCAAACCAAA AAAGACGGTA AAGCCAACGC TAAACAAAAG
CCATCGGCTC AAAACAGCAG CGCTAAACAT GGGGAAGACA AAAAACCGTC TCGTCGCCGT
AGTAGCCGAG GCCGTGGTAA ACCTAAGTCT TAG
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| Protein sequence | MTWNDPNAQQ EAQNYENPIP SRLLILQTLA DQGELTHKQL AQSFGIDNED QFDALGNRLK
AMARDGQVNR EGRPYKYRAV TKQDVVTGTV SAHAKGFGFL VLDDMPDLFL HEKQMRWVFN
GDTVNAIGTT TDNRGRTEGR IVEVIDRQQT HFIGTLEKDD EGYTVSLASP NNHQPITVTE
DNVKAVNAKP GVAVKVDIID WPTQHEFATG KIVNVMDDDN DREVIIETTL LNYDIPSEFG
AGVIKQANSY KEPNKKDLQG RIDIRDLPMV TIDGEDSRDF DDAVYAEKRP GGNYRVVVAI
ADVSHYVTPN SALDHEAFER GTSVYFPHHV VPMLPEVLSN GLCSLNPGVD RLCMVADIKL
SRAGNITGYE FYPSVMHSQA RLTYNQVNDY FDGNMENVPD SLTGNKDVKK SVDTMHQLYK
VLVKKREERN AMEFETPETY IKFNEEGGID AIVPRTRGDS HKLIEELMLL ANTCAANFAL
KNELPVLYRN HDKPDSEKSR TVHEYAKNFG ISFPEENPTQ ADYKRIIEAT KDRPDAVSIH
SMLLRSMMQA NYSPDNIGHF GLAYDEYSHF TSPIRRYPDL MLHRAIKAKV TGKKQPQMDF
TLEEAGQQTS DTERRAEKAS RFVESWLKCH YMKDHVGEEF DGVVTTVTSF GLFINLTELF
IDGLVHISNV GKDYFVYDEK QQQLIGQDKG MVYGLGDLVR IKVAAVNMDL LQIDFELIAK
LKASAMNQTK KDGKANAKQK PSAQNSSAKH GEDKKPSRRR SSRGRGKPKS
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