| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_2005 |
|---|
| Symbol | smpB |
|---|
| ID | 5204819 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 2496116 |
|---|
| End bp | 2496592 |
|---|
| Gene Length | 477 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640600237 |
|---|
| Product | SsrA-binding protein |
|---|
| Protein accession | YP_001280895 |
|---|
| Protein GI | 148653802 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0691] tmRNA-binding protein |
|---|
| TIGRFAM ID | [TIGR00086] SsrA-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.141035 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAAAA AGACCAAAAA ACCATCCAAT CAGATTGCCG CTAATAAAAA AGCGCGGCAT
GAGTATTTTA TTGAAGAAAC CTATGAAGCC GGCTTGGTAT TACAAGGCTG GGAAGTCAAA
GCCATCCGTG CTGGTAAGAT GAGTATCACT GAAGCTTATG TCGTATTCCG TGGTAATGAG
GCATTTTTAT TTGGCGCACA TATTCAGCCG TTATTATCAA GCTCAACCCA TGTCGACCCT
GACAGTATCC GTACTCGTAA GCTCCTGCTA AATCGTAAAG AGATTGATAC TTTATTCGGT
GCGGTGAACC AAAAAGGCTA TGCTTGTGTG CCGCTTGAGG TGTACTGGAA AGACTCATTG
GTGAAGTGCA AAATTGGCCT AGCTAAGGGT AAAAAGCTTC ATGATAAACG TAAGACGCTT
AAAGACAGGG ACTGGGAGCG TGATAAAGAG CGCGGCTTTA AGCAGCATTT GGATTAA
|
|---|
| Protein sequence | MAKKTKKPSN QIAANKKARH EYFIEETYEA GLVLQGWEVK AIRAGKMSIT EAYVVFRGNE
AFLFGAHIQP LLSSSTHVDP DSIRTRKLLL NRKEIDTLFG AVNQKGYACV PLEVYWKDSL
VKCKIGLAKG KKLHDKRKTL KDRDWERDKE RGFKQHLD
|
|---|
| |