| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1212 |
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| Symbol | |
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| ID | 5206758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | - |
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| Start bp | 1484140 |
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| End bp | 1488630 |
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| Gene Length | 4491 bp |
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| Protein Length | 1496 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640599432 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_001280111 |
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| Protein GI | 148653018 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0942329 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGACA TCACTGATAA CACGACCTTA GATACCCAAG CACAAGGGCT AGCGGATGAT
TTAGCCTCGT ATGCGCATGC TGACAGCGAT GTGCCCAATG AGTCGCATCA GGAGCATAAC
AAGGAGGTGA TACCGGCTGT TGATGTGGCG TTAAGCGGTC AACATCTTAT CGAGGCGTCA
GCGGGCACAG GTAAGACTTG GACCTTAACT GGTATTGTAC TGCGGCTACT TATCGAGGCG
CGGCGTGCGC CTGAGCAAAT TATAGCGACC ACTTTTACCC GAGCGGCAGC GGCTGAGATG
CGTCAGCGTA TTCATGATCG CTTGGTGGAT TTTTATCAAC TGCTGCAATG GGTCAATAAC
CTAAGTGCAG ATTTGGCCAA TAAAGAGCAC TTATATCCAG ATATCCTGCA GGTCACCCCT
GAGGACAGTA GGGATCAACG ACAGGCAGAT AAACAGGCAG ACAAAGCGGC TAATGCTAGT
CTTGCTGACG ATGAGCTTAA CCAAGACTTA GCGCATGACA AACAGCGAGA AGCAGCGCAC
AAAGCCACTG CCAAAAAGAT TCGTGCCAAG TGGTTGGTAG AGCAGGCAAA AAATGCCCGT
TTAGATGACA TCATGCAAGA CCCGATTAAC CTGCACTTGG TGGGTTACTT GCTGGATCAT
ATACACAGTT ATCCGATGAC AGATGCCATT CGCCGCACCG CACTGGTATT AACCACACTT
GATAAACTGT TTGTGGGCAC GCTTGATAGT CTGGCACAAA AATGGCTGGC AGAATATAGC
AGTGAGACAG GTCATCAGCA AGGTATGGCC ATTATTGAAG ACAGTCAGAT TGAGCAGGTG
ACCGACAGTA TTATTCATGA TGAGCTGCGA CAGTTTCAAA GCCGTTTGTA TTACGAGCAG
CCTAAGCTAT ATGGACTCAT GGAGCAGCAA GGCAAGCTGA CCGATGTCAG TGATCATAAG
TCCTATGTGA GCCGCTCGCT TAACTTTATT TCTGCACCTA TTGATGAGGT GGCGCTAAAT
GAGGCTTTTG ACTTCGCTGA TTTGGAGCAG CTGCTAGAGG ATTTTGCTAA GCTTGATTTG
ACAGATATTG AGCCGTACTT AAATCCTGAT TATCGAAAGT CACAAGGATT TAATGGTCGA
TCTAGTCTAC AGACTCGGTT TGAATTTATT ACTGAGATTC ATGAGGTAAT CGCTGACAAA
GGCGTGAGCT TTGAGAGTTA CCTAAGTGAA GATGCTAAAA AACTATTGGG GTCATTAAGA
GATGCTCAGT TCCCTAATGA TGACGGAAAA ATAAAGAACT TTAATAAGAA TAAAGAAAAA
CAGCATCAAG CCTTGTTCGA GCTAGAAACC ATCTGCCAGT TAATGTCCAT TATGGATAAG
ATGGATCGTT TAAATCAGCA TATTTTGCTA TTGTTGGCCA CGCTTAATCG TCATATTGTA
CTGGCTGTCC GTGACAGATT ACCGGTCATT TTAGAAGAGC GTGGCGAGAC GACGTTTAGC
CTGCAAATGG TACGTCTGAA TCAGGCATTG ACCGGCCGTC AGGGAGAGAA GCTGGCACGT
TATATCCGCC ACCATTATCC GGTTGCGCTT ATTGATGAAT CACAAGACAT CAATGGCGAG
CAAGCCATTA TGATTGAAAG TATTTATCTG CCGAGCCATA AACGTCAGCA CTCAGGCAGT
CAGACAGGCG ATGAGGGTAA GCAGTCAACT AATACCAAGT CTAATCAAGA GTTTTTGTTG
TTGGTTGGCG ACCCAAAGCA AGCCATTTAT GGCTTCCGCG GCGGCGATGT TGCCAACTAT
AATTATATGA AAGCCCAGTT TGATAAAAGT AGTCTATGGA CACTAGATAT CAACCGCCGT
TCTAACAAAG GGGTTATTGA CGCCTTAAAC TGCTGGTTTG GTATGCCGAC GCCCACGACA
AGCGAGAACA AATTTGCTGA GCTCGGCAGT CACATTTATT ATCAGCACAT TACTGCAGCC
AAGCTTGAGA AGCAGTTGTC CTGGTTTAAT GACTTAGACA GTTATCAAGC CGCTACATCA
AGCAGCGCTG CAACAACAGA AGTTGATTTA GTTACTGACG TGCTATCTGC TAAGCCTGTC
AGCGTCTTGC ATCTGCCTTA TGACAAAGAG CTTGAATACG ATGAACATGA AGTGACAGCA
CGCCATATTG CCGCTTTATT AAACAGCGGC CAGACCTTAA AAGGCAAACC TATTCAGCCT
AGTGACATTG GGGTGCTGGC ACGTGCCAAA AAAGACTTAA AGCGGGTAGA GGATGAGCTG
GTTAAGTTAA ATGTAGCGAC TTTGACCACC AGTGACGTGA GTATCTTTGA GACCATCATG
GCCGAAGACG TGGCTGCTTT ACTGAGCGCC ATGCTCTATC CATACCGTCA CGACATGATT
AATCGCGTAC TGACCAGCCA TCTGTATGGG CTGAGCATCA AAGAGGTCAA AGCGATGATG
ACCGACCATG AATCAGGTGT CGCTCAAAGC GATGAGGCAG CCGTAAAAGT AGCTGCTCAT
ACCAATAGTG CCACTAACGG TAGTATCCAA GGGGATACTG GCAAAAAAAG CTATCAAGAT
GTCATCAGCT ATCTTAAAGA AGCGGCTCAG CGTTGGCAGA ATTTTGGCAT CTTATCAGCG
ATGCATTATT TGCTAGATAA AAGCCCGGTA CAGCCACAAG GCGTATGGCA GGCTTTAGCA
GCGCATCCTG AAGGCGATCG ACATATCATG GATTTGCGCC ATGTGATGGA TATCTTGGCG
CAGTATGGTA TGGGTATGGG TGAACATGAG CTGCTGGCGT GGTTTAGACA AAACATAGAC
GCTGCACCCA ACAGTGACTG GGCCAAGCAG TACCCACTGC CGACAGAATC TGGCGTACAG
CTAATGACCA TTCACAAATC TAAAGGGCTT GAGTTCCCAA TTGTCTATGC GCTTGGCATG
GGCAGTGCCA GCCGCAAGTC GGGCAATAAA GAAGACTATG GGCTGTATTT GTATAATGCT
CAGCAAGCGC CTAATGCCTT GGTACAGAGG GTACAGGGCT CTTCTGGTAA TCAGCGCCGT
TTTTCAGCGG TAAAAGACTC AGCGACCACA CCAGGCTATT ATACAGATAT CGAGACCCAA
GAAGATTTTG AGGAGTTTCG TCGCCTCGGG TATGTGGCCT TTACCCGTGC CAGTGAGCTG
CTTTATGTGG TGCTGCGAGA CCCAAAAGAT AAGACTGGGT TTGATCTAAA GCCGGTGTTT
TATTGGTTTG ATTCATCAGA GCCGAAGTTT GAGCTGCCTG ATAGACTCAA AGGATCAATA
GGCATGGTAC GCGGACAAAA AGTGCATGAG TTTTATCAAG ACAATGATAC TAAGGCTAAA
ACTCATCACT TAACGGACAG TACTCAGGCT ACCCTTACTC AGCCGCGTTT AGAGCCGATC
AAATACGATA AATTTTCTGA TGTGATGCGA GACAATTACT TTTATGGCTG GGCCAAGACC
AGCTTCACCG CGCTTGCCCG TCAATTAGAT GAATCCACAC AAGCGATGGC TGTGGTCGAT
GAGCGTATCG ATGATGCCAC ATATATTGAT ATTAGCGAGG CAGATGGCGC TTTAAATGCC
CAGATACAGG AGCACGGACT AGCCATTAAA GCTGTAGATG ACATTCGCTT TAGCTTTGTT
AAAGGCGCCA ATGCGGGTAC GTTTTTGCAT GAAATCTTTG AGAAGATACA TTTTACCAAT
CCTGAGCAAT GGCCTGCGGT GATAGACAGA GCGGTCAGTG GCTATCAGCT ACCCCTGGCC
TACGCCAGTG TGGCGCATCA AAAGCGCATT TTAGAAGCCA GCAGACAAGG GGCGAATAAC
AAGACTTATC ATATCGATGA GCGGGGGCTT CAGCATCAGG CATTAATGAG CTGGATTAAT
GAGGTTTTGC ACACGCCATT ATTGGCTTCA GGTCAGAGGT TGGTGGACAT CTCACCCAAG
CAGCGCTTTG CAGAGATGGG CTTTAATATG GGATTATCTG AAACCTTTAA GGCGCAGCAA
ATTAACACCT TATTTGAGCG TTATTTGCCC CATGAGCCTG ACAAACACAT CCGCTTAACA
GCTCAAAGTA GCAGCCAGTT ATATCGTTAT CTGCGCGGTG AGATTGACTT GGTTTATGAG
CATGCAGGCA AATTTTATGT GGTTGATTAT AAAAGTAACT TTTTAGGAAA TAGCCTAAGC
AATTACGATG AAACCACCCT AAAATTAGCG ATGAGTAAAG CAGGCTATTG GCTACAAGCC
GCGATTTATC AAGTGGCGCT GCATCGCTTT TTATCGATGC GTATCGCCGA TTATACAGGT
AATGAGGCTA AGTATTTGGG CCCTGTTGAA TATGTATTTT TGCGGGGAAC TTATGCGCCA
GCAATGACAG AGCGCGCTGA GGACTACACC CCCCGTTATG GACTGGTTAC TTGGGATATT
CCCATTGAGT TTGTAAAAGC GTTAGATAAG CTATTTGGTA AGCCTCAGTA G
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| Protein sequence | MTDITDNTTL DTQAQGLADD LASYAHADSD VPNESHQEHN KEVIPAVDVA LSGQHLIEAS
AGTGKTWTLT GIVLRLLIEA RRAPEQIIAT TFTRAAAAEM RQRIHDRLVD FYQLLQWVNN
LSADLANKEH LYPDILQVTP EDSRDQRQAD KQADKAANAS LADDELNQDL AHDKQREAAH
KATAKKIRAK WLVEQAKNAR LDDIMQDPIN LHLVGYLLDH IHSYPMTDAI RRTALVLTTL
DKLFVGTLDS LAQKWLAEYS SETGHQQGMA IIEDSQIEQV TDSIIHDELR QFQSRLYYEQ
PKLYGLMEQQ GKLTDVSDHK SYVSRSLNFI SAPIDEVALN EAFDFADLEQ LLEDFAKLDL
TDIEPYLNPD YRKSQGFNGR SSLQTRFEFI TEIHEVIADK GVSFESYLSE DAKKLLGSLR
DAQFPNDDGK IKNFNKNKEK QHQALFELET ICQLMSIMDK MDRLNQHILL LLATLNRHIV
LAVRDRLPVI LEERGETTFS LQMVRLNQAL TGRQGEKLAR YIRHHYPVAL IDESQDINGE
QAIMIESIYL PSHKRQHSGS QTGDEGKQST NTKSNQEFLL LVGDPKQAIY GFRGGDVANY
NYMKAQFDKS SLWTLDINRR SNKGVIDALN CWFGMPTPTT SENKFAELGS HIYYQHITAA
KLEKQLSWFN DLDSYQAATS SSAATTEVDL VTDVLSAKPV SVLHLPYDKE LEYDEHEVTA
RHIAALLNSG QTLKGKPIQP SDIGVLARAK KDLKRVEDEL VKLNVATLTT SDVSIFETIM
AEDVAALLSA MLYPYRHDMI NRVLTSHLYG LSIKEVKAMM TDHESGVAQS DEAAVKVAAH
TNSATNGSIQ GDTGKKSYQD VISYLKEAAQ RWQNFGILSA MHYLLDKSPV QPQGVWQALA
AHPEGDRHIM DLRHVMDILA QYGMGMGEHE LLAWFRQNID AAPNSDWAKQ YPLPTESGVQ
LMTIHKSKGL EFPIVYALGM GSASRKSGNK EDYGLYLYNA QQAPNALVQR VQGSSGNQRR
FSAVKDSATT PGYYTDIETQ EDFEEFRRLG YVAFTRASEL LYVVLRDPKD KTGFDLKPVF
YWFDSSEPKF ELPDRLKGSI GMVRGQKVHE FYQDNDTKAK THHLTDSTQA TLTQPRLEPI
KYDKFSDVMR DNYFYGWAKT SFTALARQLD ESTQAMAVVD ERIDDATYID ISEADGALNA
QIQEHGLAIK AVDDIRFSFV KGANAGTFLH EIFEKIHFTN PEQWPAVIDR AVSGYQLPLA
YASVAHQKRI LEASRQGANN KTYHIDERGL QHQALMSWIN EVLHTPLLAS GQRLVDISPK
QRFAEMGFNM GLSETFKAQQ INTLFERYLP HEPDKHIRLT AQSSSQLYRY LRGEIDLVYE
HAGKFYVVDY KSNFLGNSLS NYDETTLKLA MSKAGYWLQA AIYQVALHRF LSMRIADYTG
NEAKYLGPVE YVFLRGTYAP AMTERAEDYT PRYGLVTWDI PIEFVKALDK LFGKPQ
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