| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1080 |
|---|
| Symbol | |
|---|
| ID | 5205322 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | + |
|---|
| Start bp | 1302634 |
|---|
| End bp | 1304406 |
|---|
| Gene Length | 1773 bp |
|---|
| Protein Length | 590 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640599301 |
|---|
| Product | D-lactate dehydrogenase |
|---|
| Protein accession | YP_001279980 |
|---|
| Protein GI | 148652887 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.531848 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGATA TTCAATCAGC AGGCAGTACG GATCATATTT TCCCCTCAAA GCGGGTGACT
TTGGGTACAC TGACGCCCGA TCAGGTGCTG CAACAGCTCA CCCAACTGTT GGGTGCGGCT
AATATACAAG CAGATCCCAC AAAAAACGAA TACTACCGAA TGGGGTGGCG CTCTGGTGGC
GGCAGTGCTT TGGCGGTATT GTTTCCGCAG ACTTTGCTGC AGATTTGGCA AAGCTTAGAG
GTCTGTGTGG CAGGCGACTG CATTATCATC ATGCAAGCGG CCAAAACAGG TCTGACAGAA
GGCTCAGCAC CCAACGGCGA GGATTATGAT CGACCGGTTA TTGTTATTAA TACACTGGCC
TTAAATCAGC TGTATTTGGT CAATAATAAC CAGCAGGTCA TCAGCTTGCC AGGCGCCACA
TTGCATCAGT TACAAAAGCA GCTCAAGGCG GTCAATAGAG CGCCGCACTC AGTGATAGGA
TCATCGACTT TGGGCGCGAC TATCGTGGGC GGCGTGTCCA ATAATTCAGG TGGCGCTTTG
GTAAAAAGAG GACCGGCTTA CACTGAGCTG GCGTTATTTG CTCAAATCAA TGAACAAGGT
GAGCTGATAT TGGTCAATCA CTTAAATATC GATCTTGGGG CGTCGCCAGA GCAAATCCTA
ACCAATCTAC AAACCGGTAA CTTTGATAAA ACCAAGCTGT CAGATAATGG CAAAATGGCT
TCGGACAAAG AGTATGTGGC CCGTGTCAAA GATGTCGATG CAGATACGCC AAGCCGATTT
AATGCAGACA AAAGAAGACT TTATGAGGCC AGTGGCTGCG CCGGCAAGCT GGCAGTTTTT
GCAGTGCGCC TGGACACTTA TCCAATAGCT GCCCAAGAAA AAACGTTTTA TATCGGCAGC
AATAGTATTG GTGAGCTTGC ACAGTTAAGA CGACAGATAC TCTTAGGCTT TACCAATATT
CCTGAAGTTG GCGAGTATAT GCACCGTGAT ATCTTCGATG TCTCAACCAA ATACGGCAAA
GATACTTTTT TAAGTATTAA GCATTTAGGC ACTGATACCT TGCCCAGATT GTTCTCCATC
AAAGGCGCTA TTGATGCGAA GCTGAACAAA TGGTCTTGGA TGCCAAAACA TTTCACCGAT
AAAGTGATGC AGTTTATTGC CAATATTTTT CCCAACCATT TGCCCAAGCG AATGACGCAA
TATCGCAATA AGTACGAGCA TCATCTTATC CTAAAAATGA GCGATGCAGG CATAATAGAG
GCTCAGGTAT TCTTGGAGAA GTTTTTTGCC GACTCGACAA CCGGAGATTA TTTTGAGTGC
AGCGATGAGG AATCAGAAAG TGCGTTTTTA CATCGTTTTG CCGCTGCTGG CGCCGCTTTA
AGATATGAGG TGATACATCA AGAGGAGGTC GGCGATATAT TGGCACTAGA CATCGCCATT
CCTCGTAATG AGTTAGCTTG GTTTGAAGCG CTACCAGAAG AGATTAATCA GCATTTGGAG
AAGAAGCTGT ATTACGGACA TTTCTTTTGT TACGTGTTCC ATCAAGACTA TATCTTAAAA
AAAGGCAGCG ATGCTCAGCA GGTCAAGCAC TTCATGCTTG AGCTTTTAAA CACCAGAGGG
GCCAAATATC CTGCTGAGCA TAATGTGGGT CACTTATATG AAGCAGAGCC TGATTTGCAA
AACTTCTATC AGCGCTTAGA TCCCACCAAT AGCTTTAACC CTGGCATTGG AAAAATGTCA
AAAACCAAGC GCAATTGTTC TTGCTGTTTG TAA
|
|---|
| Protein sequence | MSDIQSAGST DHIFPSKRVT LGTLTPDQVL QQLTQLLGAA NIQADPTKNE YYRMGWRSGG
GSALAVLFPQ TLLQIWQSLE VCVAGDCIII MQAAKTGLTE GSAPNGEDYD RPVIVINTLA
LNQLYLVNNN QQVISLPGAT LHQLQKQLKA VNRAPHSVIG SSTLGATIVG GVSNNSGGAL
VKRGPAYTEL ALFAQINEQG ELILVNHLNI DLGASPEQIL TNLQTGNFDK TKLSDNGKMA
SDKEYVARVK DVDADTPSRF NADKRRLYEA SGCAGKLAVF AVRLDTYPIA AQEKTFYIGS
NSIGELAQLR RQILLGFTNI PEVGEYMHRD IFDVSTKYGK DTFLSIKHLG TDTLPRLFSI
KGAIDAKLNK WSWMPKHFTD KVMQFIANIF PNHLPKRMTQ YRNKYEHHLI LKMSDAGIIE
AQVFLEKFFA DSTTGDYFEC SDEESESAFL HRFAAAGAAL RYEVIHQEEV GDILALDIAI
PRNELAWFEA LPEEINQHLE KKLYYGHFFC YVFHQDYILK KGSDAQQVKH FMLELLNTRG
AKYPAEHNVG HLYEAEPDLQ NFYQRLDPTN SFNPGIGKMS KTKRNCSCCL
|
|---|
| |