| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0761 |
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| Symbol | |
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| ID | 5204902 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | + |
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| Start bp | 909480 |
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| End bp | 910649 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640598980 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001279663 |
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| Protein GI | 148652570 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00011649 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGATT ATCAATATAC CCCCACTAAG CCCAAAGTTG GCGGTGCTCG CCTTAGTATC
TGGATTGCCT TGATTGGTAT CACGGTGTTA TTGGTATGGG CTTATTTTGC AAAAATTGAC
CAAGTTACCC GTGCAAAGGC CACAGTAATA GCCAGTGCCC GTACTCAGGA GGTTCAAGCT
TCAGATGGTG GCGTGTTAAC TCAGATTTTG GTATCAGAAG GCGATGATGT CAAAAAAGGT
CAGCTGCTTG TGGTATTAGA AGAGGAGCGT GCACAAGCCG CCTTTGACAG CTCAGCCTCT
AAATCTGCAG CTTTAGAGGC TCAGTTAGCC CGCTTAAATG CTGAAATTTT TGATCGGCCT
TTGAGATTTC CAGACAATGT ACGCAAATAC CCAGAATATG TAGAGAACCA AACTCAACTT
TATAATCGTC GCAGACAGGC CATCAATGAA GAGGTTTCTT CCTTAGAGGA TATGCTGGTG
CTGGCACAAA AAGAGCTGGA TATGAATGAG CCGTTATTGG CTTATGGAGA CGTCAGTCAG
GCAGATGTTA TTAAGCTGCG TCGTCAAGTT GCTGATATTA AGGCACAAAT TAATAACAAG
CGTAACAAAT ACTTCGAAGA TGCTCAGGCC GAAATGACCA AAGCGCAAGA AGATTTAGAT
GCAGAGCTAG AGCAGTTACG AGATCGCAGT CAAGTGCTAC AAGAGAAGCG CCTGCTATCG
CCTCAAGATG GTAAGGTGAA TAATATTAAC ATCACCACCA TCGGTGGTGT GGTTAAGCCA
GGTGAGGTGA TTATGGAGCT GCTCCCTACC AGTAGCGACT TGATTGTAGA GGCAAAGGTT
AGCCCCGCAG ATATCGCTTA TGTTCAAGAA GGGCAGGTAG CTTCAGTAAA ACTTGATGCC
TATGACTTCT CAATCTTCGG GGCCATGCGT GGTACGGTTA CCTATATTAG CCCAGATACC
TTGCTAGAAA AAACCCCAAA AGGTGATGAG CCTTATTACC GAGTGCTGAT TAAGATTGGT
AAAGCTGAGT TTGCTGGCCG CGGCGATGAG ATTGTCATCA AGCCCGGTAT GACCGCCAGT
GTGGATATAA AGGCCATGGA GCGCAGTGTA TTGTCATACT TAACCAAACC CATTACCAAA
ACCTTATCTG AGGGGTTAGG TGAGCGCTAA
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| Protein sequence | MSDYQYTPTK PKVGGARLSI WIALIGITVL LVWAYFAKID QVTRAKATVI ASARTQEVQA
SDGGVLTQIL VSEGDDVKKG QLLVVLEEER AQAAFDSSAS KSAALEAQLA RLNAEIFDRP
LRFPDNVRKY PEYVENQTQL YNRRRQAINE EVSSLEDMLV LAQKELDMNE PLLAYGDVSQ
ADVIKLRRQV ADIKAQINNK RNKYFEDAQA EMTKAQEDLD AELEQLRDRS QVLQEKRLLS
PQDGKVNNIN ITTIGGVVKP GEVIMELLPT SSDLIVEAKV SPADIAYVQE GQVASVKLDA
YDFSIFGAMR GTVTYISPDT LLEKTPKGDE PYYRVLIKIG KAEFAGRGDE IVIKPGMTAS
VDIKAMERSV LSYLTKPITK TLSEGLGER
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