| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0759 |
|---|
| Symbol | |
|---|
| ID | 5204900 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | + |
|---|
| Start bp | 905215 |
|---|
| End bp | 906819 |
|---|
| Gene Length | 1605 bp |
|---|
| Protein Length | 534 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640598978 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_001279661 |
|---|
| Protein GI | 148652568 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000466855 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGTTCA GTCCGCATAA ATACAAAAAA AAATTGTTGG TCGCCTTGTT ATTAGTCACC
GGATCAAGCT GGTCAGCTCA TGCCAATACG GTCATCACGG ATGTTCAAAT TAACTCATTA
ATTGCTCAAG CTATTGAGAC CCACCCTTTG GTAGGATCAG CTCGAGCTGA GCAGCAGGCG
ACCCTCGAAG GTATTAATGC CGCCAAGCTT AACCTGCTAC CCACACCCAG CTTCTCAACG
GGTTACAATA CCGATGATGA TTTGGTCTCT GAAGTGGGTA TTCGCCAGCC ACTATGGACC
GGGGGGCGCT TAACTGCCAA CGTTAACCAA GCAATTTTTG ATGACAAAGC GGCAGTTGAA
AATATTTATG AGCAGCAAAA CCAAGTGGCC AAAACCACCA TTGAGGCTTG GCAAACTTAC
ATTAATGCAG TGGCCCAGCA GCGTGTCTAT CTCCAAAATA TCACCCAATT ACGTAATTTT
GAGGCGATGA TGCAGCGCCG AGTCAATCAA GGGGTCTCAG CGCGTATTGA ACTTGACTTA
GTCACCAACC GTATTTTGCA AGAAACCAAT GCCTATGAAG CCGCGCAGGA ACAGCAGCGT
ATTGCAGAGG CGCGCCTACA GCAGATTACA GGTCATCCCC TGCCACCTGG CAGTGAGCAC
AGCATTCCAC CGCTTAACAC CTTGGTTGAG CAGGCCAAAG CGGCCTCGGC AGGCTTTGAA
AAAATGGCAT TTAATGATGC CAGCTTCTAC AACCCATCCG TGGTAAAAGA AATCTTCCAG
ATTGAGTCGG CCAAACAAGA GGTTAAGGCA CAAAACGCCT CAAAATACCC GACCGTGTAT
GCCGAATATA AGCACACTTA TGATTATGAT AACAAAGAGG ATGATGGGCA GTTTTATGTG
GGCTTAAACT ATCAGCCTGG AGCCGGGTTT TCAAACTTTG CCTTAACGCG CGCCTCTGAA
GCACGTGTAA ATAGCTTGGT ACAAAATAAA GAAGCCGCGC AGCGTAATGT GATGGAAAAT
ATCCAAGTAC AGTATCAGCA GTTTGCCAGT GCACGGAGCC GTGAGTTGTC TTTGGTATCG
GCAGTAGCGG GTGCCCAAAT TGTACTTGAT TCCTACCAGC GCCAGTTTAT CGCCGGTCGA
AAATCCTGGC TTGAGGTCCT AAATGCTGTG CGTGAACTCA GTGATTATCA GATTCGCTTA
GTCCAGACCC GATCAGATAT TCTGGGTGCA TTTTATAAGC TACAAGTGGA TTTTAGCTTG
ATGCCTTGGC AGACTTTTGC CAAAAATCGT CAACCGGTAA AAATGTTTAA AGTCAGCGAT
CCGGTTAAAG ACTGGATGAA CACTCAAAAC ATCACTACCC CACAGTCCCA AAAATTCGGC
TACGGTCAAC CGACAGTGGT TAATGCCGGC CAGCCCGATG AGTATATTCA AATTACCTTG
CCGGCTGATG CTCAGCATCA ACTCAATCAA GGTGGCTATA TTGTACTCAA TGACAGTCGT
TTATTAGATG AGCCTACGTT CACTGATAAA ACCGTGCAAA ATGACCCAAG TCCGCCGGAT
TCAATGAGGG TAGATACCGA CTCTAATGCC AACTCCGGCA ATTAA
|
|---|
| Protein sequence | MMFSPHKYKK KLLVALLLVT GSSWSAHANT VITDVQINSL IAQAIETHPL VGSARAEQQA
TLEGINAAKL NLLPTPSFST GYNTDDDLVS EVGIRQPLWT GGRLTANVNQ AIFDDKAAVE
NIYEQQNQVA KTTIEAWQTY INAVAQQRVY LQNITQLRNF EAMMQRRVNQ GVSARIELDL
VTNRILQETN AYEAAQEQQR IAEARLQQIT GHPLPPGSEH SIPPLNTLVE QAKAASAGFE
KMAFNDASFY NPSVVKEIFQ IESAKQEVKA QNASKYPTVY AEYKHTYDYD NKEDDGQFYV
GLNYQPGAGF SNFALTRASE ARVNSLVQNK EAAQRNVMEN IQVQYQQFAS ARSRELSLVS
AVAGAQIVLD SYQRQFIAGR KSWLEVLNAV RELSDYQIRL VQTRSDILGA FYKLQVDFSL
MPWQTFAKNR QPVKMFKVSD PVKDWMNTQN ITTPQSQKFG YGQPTVVNAG QPDEYIQITL
PADAQHQLNQ GGYIVLNDSR LLDEPTFTDK TVQNDPSPPD SMRVDTDSNA NSGN
|
|---|
| |