| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0449 |
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| Symbol | rpsD |
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| ID | 5206079 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | + |
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| Start bp | 534917 |
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| End bp | 535558 |
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| Gene Length | 642 bp |
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| Protein Length | 213 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640598664 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_001279354 |
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| Protein GI | 148652261 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.000435504 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00292894 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCCCGTT ATATTGGTCC AAAATTAAAG TTGTCGCGTC GTGAAGGTAC TGATTTACAA
TTAAAATCAG GTGTTAAGCC TTATGACGTT AAAACTAAAA AAGCAGGTCG CGTACCTGGC
CAACATGGCA ACACTCGCAA TAAAGCTTCT GAATACTCGT TACAGCTTCG TGAGAAGCAA
AAAGTTAAGC GTATGTATGG CGTTTTAGAG CGTCAGTTCG CTAACTACTA TAAAGAATCT
GCACGTGCTC GTGGCGCAAC TGGTGAACAC CTATTGCAAA TGCTAGAGCG CCGTTTAGAC
AACGTTGTAT ATCGTATGGG CTTTGGCTCA ACTCGTGCAG AAGCACGTCA GTTAGTAAGC
CACCGTGCGG TTATGATTAA AAAAGCTGGT CGCGATGAGT TTGTTCGTGT GAACATTCCA
TCAATCCAAG TTCAAGATGG TGACGTTATC GCCATTCATG AAAAAGCGAA AGAACAGTTA
CGTATTAAGA ATGCTATCGA ACTTGCCACT CAACGTGGTA TCCCTGAGTG GTTAGAAGTT
GATCATAGCA AAATGCAAGG TACATTTAAG CAAGCTCCAG ATCGTATTGA TCTACCTGCA
GAAATCACCG AAAGCTTAAT CGTTGAATTG TATTCTAAAT AA
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| Protein sequence | MARYIGPKLK LSRREGTDLQ LKSGVKPYDV KTKKAGRVPG QHGNTRNKAS EYSLQLREKQ
KVKRMYGVLE RQFANYYKES ARARGATGEH LLQMLERRLD NVVYRMGFGS TRAEARQLVS
HRAVMIKKAG RDEFVRVNIP SIQVQDGDVI AIHEKAKEQL RIKNAIELAT QRGIPEWLEV
DHSKMQGTFK QAPDRIDLPA EITESLIVEL YSK
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