| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0318 |
|---|
| Symbol | |
|---|
| ID | 5204892 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 382403 |
|---|
| End bp | 384067 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640598528 |
|---|
| Product | integral membrane sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001279223 |
|---|
| Protein GI | 148652130 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00056793 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000000160297 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAACT CTACTACCAA ACCGTCTTTG CATCGTAAGC TTAACCAGCC CCTAACCTTA
TTTTGGCGGC TTTTTTTGAG CATGCTCACC ATCTTGCTGC TGACCTCAGC CCTGTCTGTG
GGTATTGAAC GCTGGATGAA TGCCAAAGAG CTCAATAACC GGATGCAATT ACAGATAGCG
CGCTTGCTTG TTGCTCGTCA AAATACTATG GCGGCGTTAA GCGAGGATGA TTTAGACACA
GTACGCCAAC TGTATCGTGA CGAGCGCTGG CTCATGGCGC AAATGCGTAT TATCGATCAA
CAAGGACAAA TTTTATTTCC AAAGTTTGGC CGCTTTCGCT CTCAGCATGA GACTTTAGGC
CCCCCTTCCC CGCCAGATAG GGACTCTCAT AGCAGACCAC CTCCAGAATT ACCACCCCCC
TTATCTGAGC CATCTTGGCA GCAGGTCAGC GCAGACGTGC TAAATTACCC AGAGCTTCAA
GACACTACCG TGACCTCTGC CAGTGGTCAA ACTTACACCG TGCAGCTGCA GCCTCGATTG
TCGCTGCGTG ATTTGGCTTC ACTGCGTAAG GACCATACTT TAATCCGAGT GGTGCTTATT
TTGGTGTTTA GTATTTTAGT GTGTTATTGG CTCAGTCAGG CACTCACCCG CCGTATTCAT
AGATTACAAA AGGCGGTGCA CTTAATGAGT GAAGGCCGAT TTAAGGCTGG TGAGGAGCTG
ACCGACTTGG GCAATGATGA GCTTGGGGCA CTGGCTAAGG ATGTCTCTAA GCTATCGACT
CGCCTAGCTG ACAGTGAGCT TGCGCGTAAG CAGATGCTCA GTGACATATC TCATGAGTTG
CGCTCGCCGC TGGCTCGATT AGAGGTGGCC ACAGAACTCA CGCGCGACTT TGCGCCTGAG
GCCAGTCATT ATTTGGATCG AATCGAAAAA GAGTCAGCAC GGATGAATGA GCTTATCGAG
CACATCATTC GTATTCAGTC ACTACAGATG CGTCAGTATG CTTTGGATAT TGAAGCCTAT
CAGCCGGTGA ACTTGTATGC ACTGCTCGAT GAAATAAGAG AAGATGTTTG CTTTGAGTTT
CAAGATAAAG GGGTCACCTG GCAGTGGCAA ACCTCACCCA CTATTTTAGG CCTCAGTACG
TCCTCATACC CTAAGCCCTC GGCTGTCAGC TCAAATTATC GATCAGACTC AAGTCATGAA
TCACGATCAG CTACAATCAG CCGTCAAGCT ACAGCTTACA CCCTACTAGG TGATCAAGAG
CAGCTACACA GCGCATTTGA GAACATTATC CGTAATGCCT ATACTCACAC AGCGCCAAAT
TCAGTTGTGA CTGTGGTGCT GCAGTCAATC ATCGATGAAA AGACAAAAAA CCCAGCCATA
AAACTGCAAG TGATGGATGC TGGTGATGGG GTTGCAGACA CCGATTTACA ACGCATTTTT
CAGCCCTTTG TGCGCCTTAG TGCGTCACGA GAGCGCTTAA GTCAAACGCC CACAGCGTCT
GTCAATTCGC CGCAAAAATA CAGTGGATAT GGATTGGGTC TGGCAATAGC TCATGCCATT
GTCATCGCGC ATCAAGGCAG ACTGGTCGCT TACAATCGCC AAGATGGACA CTCCGGTCTG
GTTATTGAGG CCATTTTACC CATTCACAGC ACGCTCGAAT CGTAG
|
|---|
| Protein sequence | MSNSTTKPSL HRKLNQPLTL FWRLFLSMLT ILLLTSALSV GIERWMNAKE LNNRMQLQIA
RLLVARQNTM AALSEDDLDT VRQLYRDERW LMAQMRIIDQ QGQILFPKFG RFRSQHETLG
PPSPPDRDSH SRPPPELPPP LSEPSWQQVS ADVLNYPELQ DTTVTSASGQ TYTVQLQPRL
SLRDLASLRK DHTLIRVVLI LVFSILVCYW LSQALTRRIH RLQKAVHLMS EGRFKAGEEL
TDLGNDELGA LAKDVSKLST RLADSELARK QMLSDISHEL RSPLARLEVA TELTRDFAPE
ASHYLDRIEK ESARMNELIE HIIRIQSLQM RQYALDIEAY QPVNLYALLD EIREDVCFEF
QDKGVTWQWQ TSPTILGLST SSYPKPSAVS SNYRSDSSHE SRSATISRQA TAYTLLGDQE
QLHSAFENII RNAYTHTAPN SVVTVVLQSI IDEKTKNPAI KLQVMDAGDG VADTDLQRIF
QPFVRLSASR ERLSQTPTAS VNSPQKYSGY GLGLAIAHAI VIAHQGRLVA YNRQDGHSGL
VIEAILPIHS TLES
|
|---|
| |