| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5208 |
|---|
| Symbol | |
|---|
| ID | 5195561 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 5850291 |
|---|
| End bp | 5851673 |
|---|
| Gene Length | 1383 bp |
|---|
| Protein Length | 460 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640589691 |
|---|
| Product | glutamate--putrescine ligase |
|---|
| Protein accession | YP_001270510 |
|---|
| Protein GI | 148550408 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0174] Glutamine synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.179896 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.60947 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTCGG TAACCCCGTG CGCCAGTTCT TCCAGCGAGA TGAATGACTT CCTCCAGGCC
CATCCGGACA CGCAGTACGT AGACCTGCTG ATCTCCGACA TGAATGGCGT GGTACGTGGC
AAGCGCATCG AGCGGGCCAG CCTGCACAAG GTGTACGAGA AGGGCATCAA CCTGCCCGCA
TCGCTGTTCG CCCTTGATAT CAACGGTTCC ACTGTCGAAA GCACCGGCCT TGGCCTGGAC
ATCGGCGACG CCGACCGTAT CTGTTTCCCG ATCCCCGGCA CGCTGTCGGA CGAGCCGTGG
CAGAAGCGCC CCACCGCCCA GCTGCTGATG ACCATGCACG AGCTGGATGG CCAGCCGTTC
TTCGCCGACC CGCGTGAAGT GCTGCGCCAG GTGGTGAGCA AGTTCGACGA CCTGGGCCTG
GATATTTGCG CCGCGTTCGA GCTGGAGTTC TACCTGATCG ACCAGGACAA CCTCAACGGC
CGCCCGCAGC CGCCGCGCTC GCCGATCTCC GGCAAGCGCC CGCAGTCGAC CCAGGTGTAC
CTGATCGACG ACCTCGACGA GTACGCCGAC TGCTTGCAGG ACATGCTCGA AGCAGCCAAG
GAACAGGGCC TGCCTGCCGA CGCCATCGTC AAGGAAAGCG CCCCGGCGCA GTTCGAGGTC
AACTTGCACC ACGTGGCGGA TCCGCTGAAG GCCTGCGACT ATGCGATCCT GCTCAAGCGC
CTGATCAAGA ACGTCGCCTA CGACCATGAA ATGGACACCA CCTTCATGGC CAAGCCCTAC
CCGGGCCAGG CAGGCAATGG CCTGCATGTG CACATTTCAT TGCTGGACAA GAAAACCGGC
AAGAACATCT TCGCCAGTGA CGATCCGCTG CAAAGCGATA CGTTGCGCCA CGCCATTGGT
GGCGTGCTGG AAACCATGCC GGCGTCGATG GCCTTCCTGT GCCCCAACAT CAACTCCTAC
CGCCGCTTCG GTGCGCAGTT CTACGTGCCC AATGCGCCGA GCTGGGGCCT GGACAACCGC
ACCGTGGCCG TACGCGTGCC CACCGACAGC AGCGACAATG TGCGCCTTGA GCACCGTGTA
GCCGGCGCCG ATGCCAACCC GTACCTGATG CTCGCGGCGA TCCTTGCCGG CGTTCACCAT
GGCCTGACCA ACAAGGTCGA GCCCGAGGCG CCGATCGAAG GCAACTCCTA CGAGCAGCTG
GAGCAAAGCC TGCCGAACAA CCTGCGCGAT GCCCTGCGCG CGCTGGATGA CAGCGAAGTC
CTCAACCAAT ACATCAGCCC GGACTACATC GATATCTTCG TGGCCTGCAA GGAAAGCGAA
CTGGCCGAGT TCGAAGTGTC GATTTCAGAC CTCGAGTACA ACTGGTACCT GCACACGGTG
TAA
|
|---|
| Protein sequence | MTSVTPCASS SSEMNDFLQA HPDTQYVDLL ISDMNGVVRG KRIERASLHK VYEKGINLPA
SLFALDINGS TVESTGLGLD IGDADRICFP IPGTLSDEPW QKRPTAQLLM TMHELDGQPF
FADPREVLRQ VVSKFDDLGL DICAAFELEF YLIDQDNLNG RPQPPRSPIS GKRPQSTQVY
LIDDLDEYAD CLQDMLEAAK EQGLPADAIV KESAPAQFEV NLHHVADPLK ACDYAILLKR
LIKNVAYDHE MDTTFMAKPY PGQAGNGLHV HISLLDKKTG KNIFASDDPL QSDTLRHAIG
GVLETMPASM AFLCPNINSY RRFGAQFYVP NAPSWGLDNR TVAVRVPTDS SDNVRLEHRV
AGADANPYLM LAAILAGVHH GLTNKVEPEA PIEGNSYEQL EQSLPNNLRD ALRALDDSEV
LNQYISPDYI DIFVACKESE LAEFEVSISD LEYNWYLHTV
|
|---|
| |