| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5173 |
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| Symbol | |
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| ID | 5193951 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 5815049 |
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| End bp | 5816716 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640589656 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001270475 |
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| Protein GI | 148550373 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.209922 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCCACGC CTGTCGAACC TTTGCGTTTG CTGCTGTTGG CCGATGAGCC GGAATGGGCT
GCCTCGTTGC ACGCGTGCAT GCCCGCACTG GGGGGCAGCG CCGTGTTACT GACTGCGCCA
AACTGGGAGG CGGTCGACAG CCTGTTCAGC CATGATCGCC AGGCCGTCGT GCTAGCAACA
CCCGCCTTGC AGCCCGCCCC CGGGCGTTGC GAGCTGCCGA CTATTCTGCT GCTTGAACAC
GAGCCTGAGG CAGCGCCCAG CGCTGTCAGT GACTGGCTGG TGCGCGACCA GCTCAACGCC
GATACCCTGC GCCGCTCACT GCGCCATGTG CGAGAGCGAG GGGTGCTGGT CGCCACCTTG
CAGCGCCTTG CCGAGCAGGA CCCGCTGACC GGCATCGCCA ACCGCCAGGG CTTCCAGGCT
TTGCTTAATG CACGCCTGGC CGAAAACGAA GGCCGTGGTG TCGCGCTTGG CCACCTGGAC
CTGGACAACT TCCGCCACGT CAACGACGCC CTGGGCCACC AGAGCGGTGA CCGGTTGATC
CTGCAGGTGG TGGCACGGCT GAAGCATCAG CTGGAGGCGG GCGACCAGCT GGCACGTCTG
GGTAGCGACG AGTTCGCCCT GCTGATCGAC ACCCGTCGCG ATGCCAACCG CGCCGAATGG
ATTGCCGAAC GCATCGTCGA GGCCTTGGCA GAGCCCTACT GGATCGACGG TGAGAGCCTG
CTGCTGGGCT GCAGCCTGGG CCTTGCACAT GCTCGCGCGC AAAGTGGCGC CGATCCGCTG
ATGTGGCACG CGCACATCGC CATGCGTCAG GCCAAGGGCA GCCAGGGCTG CACCTTCCAT
GTGTTCAACG AACGCATCAA CCGCAACGCC CGCAGCCTTG CTGACCTGGA AAGCGAGTTG
CGCCGCGCCC TGCGCCGCGA CGAACTGGAG CTGCACTATC AGCCCCGCCT GAACCTGGCT
GACGGGCGCA TTGTTGGCCT GGAGGCGCTG GTGCGCTGGC GCCATGCCGA GCGCGGGCTG
CTGCCACCTA GTGAGTTCGT GCCACTGGCC GAGCAGAGCG GCCTGATCGT GCCCTTGGGT
TATTGGGTTA TTTCCCGTGC CCTGCGTGAC ATGCAGGCAT TGTGCGAGCG CGGCCTGGAG
CCGCTGCACA TGGCGGTCAA CCTGAGTTTT CGCCAATTCC AGGACAGCCA GCTACTGGCC
ACGTTGAGTC GCCTGATCCT CGAGCACGGT GTGGATGCCC GCTGGCTTGA GTTCGAGCTG
ACCGAGACGG CGGTGATGCG CCGCAACGAG GTGGTGCGCC AGACCATGGA CGCGCTGGGT
CGCCTGGGCG TGCGCTTCTC GCTCGATGAT TTCGGCACCG GGTTTTCTTC GTTCGTGCAC
CTCAACAGCC TGCCGATCAC CTTGCTCAAG GTGGACCGCA GCTTTGTTGC GGAAATGGAA
ATGCGTGAAG AGAACCGCAA GCTGGTACAC GCCATGATCA ACCTGGCGCA CAACCTCAAC
CTCGAGGTGG TGGCCGAGGG AGTGGAGAGT GAAGAGCAAC TGGCGTTGCT GCGTGGGTTT
GGTTGCGACC AGGTGCAGGG TTTCCTGGTC AGCAAACCGC TACCGATAGG GGAATTGATG
GCGTATTTGC TGCAGGCGCC CGGACGCCAG TTGGAGGCTG TCCTGTAG
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| Protein sequence | MSTPVEPLRL LLLADEPEWA ASLHACMPAL GGSAVLLTAP NWEAVDSLFS HDRQAVVLAT
PALQPAPGRC ELPTILLLEH EPEAAPSAVS DWLVRDQLNA DTLRRSLRHV RERGVLVATL
QRLAEQDPLT GIANRQGFQA LLNARLAENE GRGVALGHLD LDNFRHVNDA LGHQSGDRLI
LQVVARLKHQ LEAGDQLARL GSDEFALLID TRRDANRAEW IAERIVEALA EPYWIDGESL
LLGCSLGLAH ARAQSGADPL MWHAHIAMRQ AKGSQGCTFH VFNERINRNA RSLADLESEL
RRALRRDELE LHYQPRLNLA DGRIVGLEAL VRWRHAERGL LPPSEFVPLA EQSGLIVPLG
YWVISRALRD MQALCERGLE PLHMAVNLSF RQFQDSQLLA TLSRLILEHG VDARWLEFEL
TETAVMRRNE VVRQTMDALG RLGVRFSLDD FGTGFSSFVH LNSLPITLLK VDRSFVAEME
MREENRKLVH AMINLAHNLN LEVVAEGVES EEQLALLRGF GCDQVQGFLV SKPLPIGELM
AYLLQAPGRQ LEAVL
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