| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5059 |
|---|
| Symbol | |
|---|
| ID | 5190999 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 5686622 |
|---|
| End bp | 5687542 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640589542 |
|---|
| Product | SdiA-regulated domain-containing protein |
|---|
| Protein accession | YP_001270361 |
|---|
| Protein GI | 148550259 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3204] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.181452 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCATCCT CCTCCAGCGC CCCGGCAACT CCCAAGCGTC GCTTCTACCT GCGCTGGCCC
TTCGGCCTGG CCGTGGCGGC GGTGATCGGC TATGGCGTGG CCGTGGCCAT GCACTGGGAT
GACCGCGGTG CACTGTGGGT AAAAGAAAGC TTCGAAAGCA CCACCGCGCG CAGCGATAGC
GTGTGGCTGC CGGATTACCA GGTGGACATC GACGCCAAAC CGCTGCCGGG CATGGACGAT
GACGAAGCCT CGGACGTGGC CTTCAACCCG CAGACCCGCA CCCTGTTCGC GGTCATGGGC
AAGAACCCGT TCCTGGTCGA GCTGAGCCTG GAGGGCGATG TACTGCGCAA GATCCCGCTC
AACGGCTGGA ACAACCCCGA AGGCATCGCG GTGCTGGAAG ACGGCAACCT GGCCATCACC
GACGAGCGCC TGCATGACCT GACCGTGGTC AAGGTGGACG CGCAGACCAC TGCACTGAAT
CACGACGACT TCCCGAGCCA CGACCTGGGC CCTTCGGCCA AGAGCAACAA GGGCTTCGAG
GCCATCGCCT GGGACCCGCT GCGCCAGCGC CTGATCATTG GTGAGGAGCG CCCGCCCAAG
CTGTACACCT GGAACACCGA TGGCCGCAGC CCGCTCAAGG GTGAGAAGCA GCCGTTGCCT
AGCGATGAGC TCGACTTGCG CAACCTGTCT GCGCTGGGTG TCGACCCGCG TACCGGCCAC
TTGCTGGTGC TCTCGGCCGA CTCCAACATG CTGCTGGAGC TGGACGAGCA GGGCCAGCAA
GTCAGCTTCA TGACGCTGCT GGGCGGCTTC AACGGGCTTG AAGACACCAT TCCGCGGGCT
GAAGGGGTGG CCATGGACGA CAGAGGAAAC TTATATATGG TCAGCGAGCC GGCGCTTTTC
TATCGATTCA AAAAGAACTG A
|
|---|
| Protein sequence | MPSSSSAPAT PKRRFYLRWP FGLAVAAVIG YGVAVAMHWD DRGALWVKES FESTTARSDS
VWLPDYQVDI DAKPLPGMDD DEASDVAFNP QTRTLFAVMG KNPFLVELSL EGDVLRKIPL
NGWNNPEGIA VLEDGNLAIT DERLHDLTVV KVDAQTTALN HDDFPSHDLG PSAKSNKGFE
AIAWDPLRQR LIIGEERPPK LYTWNTDGRS PLKGEKQPLP SDELDLRNLS ALGVDPRTGH
LLVLSADSNM LLELDEQGQQ VSFMTLLGGF NGLEDTIPRA EGVAMDDRGN LYMVSEPALF
YRFKKN
|
|---|
| |