| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4822 |
|---|
| Symbol | |
|---|
| ID | 5194326 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 5407348 |
|---|
| End bp | 5408790 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640589307 |
|---|
| Product | peptidase U62, modulator of DNA gyrase |
|---|
| Protein accession | YP_001270126 |
|---|
| Protein GI | 148550024 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0312] Predicted Zn-dependent proteases and their inactivated homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.466892 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGATT CCAGCGCCCT GCTGCGCCAG CGCTTTGCTG CGCTGCGCAG TACGGCCGAG
TTGTTTTCCC TGCGCCATGT GAAACAGTCT CACCAGGCGC TTTCGGTTCG CCGCAACGTC
GCCGAACCAC CCTTCTTCAG CCAGGATGAG GGCGCCATGC TCACCGTGCG GGTCAATGGC
GTGGAGGCCT ACGCTGCCAC CGCCGACCTG TCCCAGGCTG GCCTGCAGCG CGCGCTTGAG
CAAGCCGAGG CGCTGGCGCG GCAGATCGCC CGGCACAGCC TGCTGGACCT GCGCGAACAC
GCCGTGACCA GTGCACGCCA CGACCATGTT TCGCCCAACT TCGACCAACC CGTACCCAGC
CTCGCCGACT GCCTTGGCCT GCTCGCCGCC GAATCGGCCA GCGTGCCCAG GGACAGCCGT
TTGGTGGACT GGCAGGCCAG CCTGGGGCTG AGCCTGGTCG AGCAAACCTA CCTGAACTCG
GCCGGCGCCG AACTGCGCCA TGCCCAGCGC TTCCTGTTCC CGGGCATGGG GGTGACCGCC
AGCGACGGCC AGGACAGCCA AAGCCGCAGC CTGGGCCGCG ACAACTTCGG CCAACAGGGT
GGTTTCGAGA TCATCGAGCG CTGCGGCCTG GTCGGCGCGG CCAGTCGGGT GGCCGACGAA
GCACTGCAAC TGCTGCAGGC ACCGAACACC CCCAGTGGCC CGCGCGACCT GCTGTTGATG
CCGGACCAGA TGATGCTGCA GATTCACGAA TCCATCGGCC ACCCGCTGGA GATGGACCGC
ATTCTCGGCG ACGAGCGCAA CTACGCCGGC ACCAGCTTCG TCAAAGCCAG CGACTTCGGC
CACCTGCAGT ACGGCTCCAG CCTGCTGAAC GTGACCTTCG ACCCGACCAT TGGCGAAGAG
CTGGCCAGCT ACAGTCATGA CGACGACGGC ACCCCGGCCA GCAAAGCGTT CCTGATACGC
GAAGGCCTGC TGCTGCGCCC GCTGGGTGGC GCGCTGTCGC AGTTCCGCTC TGGCCTGGAC
GGCGTGGCCA ACAGCCGTGC CTGCGGCTGG AACCGCGCGC CGATCGACCG CATGGCCAAC
CTCAACATCG AGCCGGGCGA CCAGTCTTTC GAGCAACTGG TCGGAGGCAT CGAGCAGGGC
ATCCTGATGC GTACCAACCG TTCCTGGTCC ATCGACGATG CGCGCAACAA GTTCCAGTTC
GGCTGCGAAT GGGGCCAGTT GATTGAAAAT GGCGAGCTCA AGGGCATCGT CAAGAACCCC
AACTACCGCG GCATCTCCGC GCAGTTCTGG CGCAACCTGT CGGCGGTTGG CGACCACAGT
ACCTTCCAGG TGCTGGGCAC GCCCAACTGT GGCAAGGGCG AACCCAATCA GGTGGTGCGG
GTCGGCCACG CCTCGCCGGC CTGTGTGTTC CGCCAGATCG ATGTATTCGG AGGAGACGCC
TGA
|
|---|
| Protein sequence | MFDSSALLRQ RFAALRSTAE LFSLRHVKQS HQALSVRRNV AEPPFFSQDE GAMLTVRVNG
VEAYAATADL SQAGLQRALE QAEALARQIA RHSLLDLREH AVTSARHDHV SPNFDQPVPS
LADCLGLLAA ESASVPRDSR LVDWQASLGL SLVEQTYLNS AGAELRHAQR FLFPGMGVTA
SDGQDSQSRS LGRDNFGQQG GFEIIERCGL VGAASRVADE ALQLLQAPNT PSGPRDLLLM
PDQMMLQIHE SIGHPLEMDR ILGDERNYAG TSFVKASDFG HLQYGSSLLN VTFDPTIGEE
LASYSHDDDG TPASKAFLIR EGLLLRPLGG ALSQFRSGLD GVANSRACGW NRAPIDRMAN
LNIEPGDQSF EQLVGGIEQG ILMRTNRSWS IDDARNKFQF GCEWGQLIEN GELKGIVKNP
NYRGISAQFW RNLSAVGDHS TFQVLGTPNC GKGEPNQVVR VGHASPACVF RQIDVFGGDA
|
|---|
| |