| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4791 |
|---|
| Symbol | |
|---|
| ID | 5191115 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 5367119 |
|---|
| End bp | 5369023 |
|---|
| Gene Length | 1905 bp |
|---|
| Protein Length | 634 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640589276 |
|---|
| Product | DNA topoisomerase IV subunit B |
|---|
| Protein accession | YP_001270095 |
|---|
| Protein GI | 148549993 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
|---|
| TIGRFAM ID | [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.543353 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAATC CCAGCGCTAG CGCCTATAAC GCAGACGCCA TCGAAGTCCT CTCGGGCCTT
GATCCGGTCC GCAAGCGGCC GGGCATGTAC ACCGATACCA GCCGCCCCAA CCACCTGGCC
CAGGAAGTCA TCGACAACAG TGTCGACGAA GCACTGGCCG GCCACGCGCG TTCGGTGCAG
GTCATCCTGC ATGCCGACCA TTCGCTGGAA GTCAGCGACG ACGGCCGCGG CATGCCGGTG
GACATCCATC CGGAAGAGGG CGTGTCCGGG GTCGAGCTGA TCCTCACCAA GCTGCACGCC
GGCGGCAAGT TCTCCAACAA GAACTATCAG TTTTCCGGTG GCCTGCACGG GGTGGGTATC
TCGGTGGTCA ACGCCTTGTC GACGCAGGTG CGCGTGCGCG TCAAGCGTGA CGGCAATGAA
TACCAGATGA CCTTTGCCGA TGGCTTCAAG GCCAGCGAGC TGGAAGTGGT CGGCTCGGTC
GGCAAGCGCA ACACCGGCAC CAGCGTGTAC TTCAGCCCAG ACCCGAAGTA CTTCGACTCG
CCCAAGTTTT CCATCAGCCG TCTCAAGCAC GTGCTCAAGG CCAAGGCGGT ATTGTGCCCG
GGGCTGCTGG TCAGCTTCGA GGACAAGGCC AGCGGCGAAA AGGTGGAATG GCACTACGAG
GATGGCCTGC GCTCCTACCT GGTCGACTCG GTCAACGAAT TCCAGCGCCT GCCCGACGAG
CCGTTCTGTG GCAGCCTGGC GGGTAACAAG GAAGCGGTTG ACTGGGCTTT GCTGTGGCTG
CCCGAAGGCG GCGACAGCAT TCAGGAAAGC TACGTCAACC TGATCCCCAC CGCCCAGGGC
GGCACCCACG TCAACGGCCT GCGCCAAGGC TTGCTGGATG CCATGCGTGA GTTCTGCGAG
TTCCGCAGCT TGCTGCCGCG CGGGGTGAAG CTGGCGCCGG AAGACGTTTG GGAGCGCATC
ACCTTCGTAC TGTCGATGAA GATGCAGGAC CCGCAGTTCT CCGGGCAGAC CAAAGAGCGC
CTGTCATCGC GCGAGGCCGC CGCGTTCGTC TCCGGTGTGG TCAAGGATGC TTTCAGCCTG
TGGCTCAACG CCCACCCCGA GCTGGGCATG CAACTGGCAG AACTGGCCAT CAGCAACGCC
GGGCGCCGCC TCAAGGCCAG CAAGAAGGTC GAGCGCAAGC GCATCACACA GGGCCCGGCA
TTGCCCGGCA AGCTGGCCGA TTGTGCGGGC CAGGACCCGA TGCGTGCCGA GTTGTTCCTG
GTCGAGGGTG ACTCGGCCGG TGGTTCGGCC AAGCAGGCGC GGGACAAGGA GTTCCAGGCC
ATCCTGCCGC TGCGCGGCAA GATCCTCAAC ACCTGGGAAG TGGACGGTGG CGAAGTCCTG
GCCAGCCAGG AAGTGCACAA CATAGCCGTG GCCATTGGCG TCGATCCGGG GGCAACCGAC
CTTGCGCAGC TGCGCTATGG CAAGATTTGC ATCCTCGCCG ACGCTGACTC CGATGGTCTG
CACATCGCCA CGCTGCTGTG TGCGCTGTTT GTTCAGCACT TCCGGGCACT GGTCGAAGCT
GGGCATGTTT ATGTGGCCAT GCCGCCCCTG TACCGCATCG ACCTGGGCAA GGAAATCTAC
TACGCCCTCG ACGAAGCCGA GCGTGACGGC ATCCTCGACC GCCTGGTGGC CGAGAAGAAG
CGCGGCAAGC CGCAGGTAAC ACGCTTCAAG GGCCTGGGCG AGATGAACCC GCCGCAGTTG
CGCGAAACCA CCATGGACCC GAACACCCGG CGCCTGGTGC AGCTTACCCT GGACGACGTA
GAAGCCACCT GCGAGCTGAT GGACAAGCTG CTGGCCAAGA AGCGCGCCGG TGACCGCAAG
AGTTGGCTGG AAACCAAGGG CAACCTGGCC GAGGTCATGG TTTGA
|
|---|
| Protein sequence | MANPSASAYN ADAIEVLSGL DPVRKRPGMY TDTSRPNHLA QEVIDNSVDE ALAGHARSVQ
VILHADHSLE VSDDGRGMPV DIHPEEGVSG VELILTKLHA GGKFSNKNYQ FSGGLHGVGI
SVVNALSTQV RVRVKRDGNE YQMTFADGFK ASELEVVGSV GKRNTGTSVY FSPDPKYFDS
PKFSISRLKH VLKAKAVLCP GLLVSFEDKA SGEKVEWHYE DGLRSYLVDS VNEFQRLPDE
PFCGSLAGNK EAVDWALLWL PEGGDSIQES YVNLIPTAQG GTHVNGLRQG LLDAMREFCE
FRSLLPRGVK LAPEDVWERI TFVLSMKMQD PQFSGQTKER LSSREAAAFV SGVVKDAFSL
WLNAHPELGM QLAELAISNA GRRLKASKKV ERKRITQGPA LPGKLADCAG QDPMRAELFL
VEGDSAGGSA KQARDKEFQA ILPLRGKILN TWEVDGGEVL ASQEVHNIAV AIGVDPGATD
LAQLRYGKIC ILADADSDGL HIATLLCALF VQHFRALVEA GHVYVAMPPL YRIDLGKEIY
YALDEAERDG ILDRLVAEKK RGKPQVTRFK GLGEMNPPQL RETTMDPNTR RLVQLTLDDV
EATCELMDKL LAKKRAGDRK SWLETKGNLA EVMV
|
|---|
| |