| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4661 |
|---|
| Symbol | |
|---|
| ID | 5190520 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 5228282 |
|---|
| End bp | 5228827 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640589144 |
|---|
| Product | Sel1 domain-containing protein |
|---|
| Protein accession | YP_001269965 |
|---|
| Protein GI | 148549863 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.150722 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.332421 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGCA CCGGCCGCGC CCTGACCCTG GGCTGCCTGT TGCTTCTTCA GCCCCTGCTG
GCCCTGGCGG AGGGCGGTAA CTCGTTGCTG ATTCCGGCGA CGGGCCGCTG CACCTTGAAC
GTTCAGCCTG AAGACCTGGC AAGCGCCCTC AAGGCCTGCG AGCAGACGGC GACTGCGGGG
GATGCCCAGG CGCAATTCGA ACTGGGCGAG TATTACTACA CGCAAACGCC AAAAAACCTG
GGCAAAGCCC TGGACTGGTT CCAGAAGGCA TCGCTGCAAG GCCAAGCCGA CGCCCAATAC
CGTCTGGGTG CCATGTTCTT CCATGGCGAA GGGGTCAAGG CCAACAACGT ACAGGCCTAC
ATCCTGCTGA AAATGGCTGC GGTCAACGGC GCCGAAGATG CGCTGGACAT GGCCGACGAA
GTAACCGAGC AAATGCCCCG TGACGAACTG GAGCATGCCA CCCAGGTGCT CGGCCAGATT
TTCCGCAAGT ACCTGCTCGA ACTGCAGAAC GCCGAAGGGC GCACGCCGTT CTCGCCGCTT
CCCTGA
|
|---|
| Protein sequence | MNRTGRALTL GCLLLLQPLL ALAEGGNSLL IPATGRCTLN VQPEDLASAL KACEQTATAG
DAQAQFELGE YYYTQTPKNL GKALDWFQKA SLQGQADAQY RLGAMFFHGE GVKANNVQAY
ILLKMAAVNG AEDALDMADE VTEQMPRDEL EHATQVLGQI FRKYLLELQN AEGRTPFSPL
P
|
|---|
| |