Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4538 |
Symbol | |
ID | 5193760 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 5067408 |
End bp | 5070890 |
Gene Length | 3483 bp |
Protein Length | 1160 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640589013 |
Product | exodeoxyribonuclease V, gamma subunit |
Protein accession | YP_001269842 |
Protein GI | 148549740 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1330] Exonuclease V gamma subunit |
TIGRFAM ID | [TIGR01450] exodeoxyribonuclease V, gamma subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.483988 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0568406 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCCACA CCGCCCATCT CCACCCAGGC TTCATGATCG TCCACGGCAA CCGCCTCGAC GACCTGCGTA GCCTGGTAGT GAGCTGGATG CGTCGCTACC CGCTGGCGCC TCTGGAAAAC GAAATTGCCC TGGTGCAAAG CAATGGCATC GCCCAATGGC TGAAGCTGGC CCTGGCTGAA GATCCGCTGG AAGATGACCA AGGCGGCTGC GGCATCGCCG CTGCCATCGA TGTGCAACTG CCCGGTAGCT TTATGTGGCA GCTCTACCGC AGCGTGCTTG GCCGTAGCGA AATTCCCGAA GTGTCTCTTC TCGACAAGGC ACCACTGACC TGGCGGCTGA TGCGTCTGTT GCCAGCGCTC ATCGAGCGTC CGCATTTCGA GCCACTGCGG CGCTTCCTCA CCGACGACAG TGACTTGCGC AAGCGCTACC AGCTAGCCGA GCGCCTGGCC GACCTGTTCG ACCAGTACCA GGTCTACCGT GCCGATTGGC TCAAGGACTG GGCCAGTGGC GAGCACGTCA TCAACACGGC CCGCGGCGAG CGCAAAGTAC TGCCGCCAGG CAACCGCTGG CAAGCCGAGT TGTGGCGAGC ATTACTGGAG GATGTTGGCG AGCAAGGCAT GGCGCAGAGC CGCGCCGGAG TACACCAACG TTTCATCGAG CGCATCAACA GCCTGGAGCA GGCGCCTGCA GGGCTGCCAC CGAGGGTGAT CGTGTTCGGT ATCTCTTCGC TGCCGGCCCA GGCCCTGGAA GCGCTGGCAG GCCTGTCGCG TTTCAGTCAG GTATTGCTGT GCGTACACAA CCCATGCCGC CACCACTGGG CCGATATCGT CGCCGACAAG GACCTGTTGC GCCACCAGTA CAAACGCCAG CAACGCAAGC AAGGCATGCC CCTGCAATTG GACGACCAGA CGCTGCACCA GCATGCCCAC CCATTGCTGG CAGCCTGGGG TAAACAAGGC CGCGACTACA TCAACCTGCT CGACAGCTAT GATGACCCAG GCAGCTACCA GGGCGTGTTC AGCGACGGCC GCATCGACCT GTTCAGCGAC GGTTCGCCCA CCACGCTGCT AAACGAACTG CAGGACGACA TCCTGGAGTT GCGCCCGCTC GCCGAGAGCC GCGAACGGTG GCCGCCAGTC GACACCACAA AAGACCGCTC GATCCGCTTC CATGTTGCGC ACAGCCCGCA ACGTGAAGTG GAGATCCTCC ACGACCAGCT GTTGGCCCGC TTCAGCGCCG ACCCGACTTT GCGCCCGCGC GACGTAATCG TCATGCTGCC GGACATCGAC ACTTACGCGC CGCATATCCG CGCCGTCTTC GGCCAGTTGC AGCGCAACGA CCCGCGCTAC ATCCCGTTCA CCCTGACAGA CCAGGGCCAG CGTGGTCGCG AGCCTTTGCT GATCGCGCTT GAGCACCTGC TCAAACTGCC TGACAGCCGC TTCGCGGTCA GCGAAGTGCT CGACCTGCTG GACGTGCCGG CAGTCCGCGC CCGCTTCGGC ATCCGCGAAA ACGATCTGCC CACGCTGCAC CGCTGGATCG AGGGCGCTGG CATCCGTTGG GGCCTTGACG CCGCGCAGCG GGCGAGCCTG GGCTTGCCCG CCGGGCTCGA ACAGAACAGT TGGCGTTTCG GCTTGCGCCG CATGCTGTTG GGTTATGCCG TGGGGGTGGG TGAGGCCTGT GATGGTATTG AGCCCTACGA TGAAATCGGT GGCCTGGACG CGGCACTGAT CGGCCCGCTG GTCGCGTTGC TGGATGCGCT CGAAGTCGCC TGCCAGGCCT TGTCCGAGCC TGCCACCGTC AGCCAGTGGG GCGAGCGACT GCATGCCTTG CTGCACGTGT TCTTCCTCGC CGAGGACGAG GGTGATGAGT TCCTGTTGAT GCAGTTGCAG GATTTGCGTG ATAGCTGGCT TGAGGTGTGC GAGACCGTCG GCCTGCACGA CCCGCTACCG CTTACCGTGG TGCGTGAAGC CTGGTTGTCG GGCCTTGATC AGGGCAAGCT GTCACAACGT TTCCTCGCCG GCTCGGTCAA CTTCTGCACA CTCATGCCCA TGCGCGCGAT CCCGTTCAGG GTGGTCTGCC TGCTGGGCAT GAACGATGGC GATTATCCGC GTGCGCAGCC ACCGCTGGAC TTCGACCTGA TGGCCAGCGA CTATCGCCCC GGCGACCGCT CACGCCGCGA AGACGACCGT TACCTGTTGC TTGAAGCGCT ACTGTCCGCA CGTGACCAAC TGTATGTCAG CTGGGTCGGG CGCAGTATTC GCGACAATAG CGAACGCCCG GCCTCGGTGC TGATCGGCCA GTTGCGCGAT CACATCGCTG CGGGCTGGCA TTTGGCCGAC GCGCAGCAGG GCCAGCCCGC GAAACCGGGC GAGCAACTGT TGCACGCACT GACCCAGGAG CACCCGCTGC AGCCGTTCAG CCCTCGGTAC TTCCAGAAGG GCAGCCCATT GTTCAGCTAT GCCCATGAAT GGCAGGTGCT GCACCAGCAA GGTGAGGCAG ACGAGCAGAG CGAGCCGGGC CTGCCGCCTT ATCAGGACGC TGAAGCCCTG AGTTTGCACC AGCTGAATGA CTTCTTGCGC CACCCGGTAC GGCACTTCTT CAGCCAGCGC TTGAAGGTGT ACTTTGAGGC GCTGGAAGCG CCGACCCCGG ACGAGGAACC CTTCGTCCTC GATACCCTGC AACGCTACGG CGCCAGTGAA AGCCTGCTTG GCGCCGCCTT GGCCGAACCG GACAACGCCG AACAGGCCTT GCGCGCCCAG GCCCGACGCC TGCAGGCCTG CGGTTTGCTG CCGCTAGCAG GTTTCGGCGA ACTGCTGCAA AACGAGTTGA TCGAACCGCT GCCGGACCTG CTGCAACGTC ACCAGCAATT GCTGCAACGC TGGCCACAGC TGGTCGAGGG CGCTTTGCCG GTGCATTTCG AGCACGGTCA GCACCGTCTG GAGGGCTGGC TGGGCCGGGT GTTCCAGGCG GAAGATCAGA GCCTTCTCAG CATCACCACA GTACCCAACA CTATCAGTGC CGGGCGCAAC AACCTGAAGT GGCACCGCCT TATCGCGCCC TGGGCTACGC ACCTGGCGGC CTGTGCAGCG GGCTACCCCT ATAACAGTGC ATTGGTAGCC AGTGACCTGA CCCTGTTGCT TGCACCGCTG CCGCAAGCGC TGGCCGCGCA ACTGCTGGGC GACCTACTGG TGGCCCGTCA GGCGGCAATG AATGCGCCGT TGCCAGTCGC GGCCAAGACC GCGTTCGCCT GGTTGGCCCA GGACGATGCC GATAAAGCCA TGGCCGCAGC AGCTCGCGCC TACGAAGGCG ACGAACGCAC CAGTTTTGGC GAACGGAGTG AAAGCATTGC CTTGGCCCGC CAGTTCCGGG ACTTTGCAGC ACTCACTGCT GACGAAACGT TTGAAGGCTG GTGCGAAACC TTGTATCGCC CGTTGTTCAC CGCCCCTTGG CAGACCTTGG GCAACCCGGA GAAAGGCGCA TGA
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Protein sequence | MPHTAHLHPG FMIVHGNRLD DLRSLVVSWM RRYPLAPLEN EIALVQSNGI AQWLKLALAE DPLEDDQGGC GIAAAIDVQL PGSFMWQLYR SVLGRSEIPE VSLLDKAPLT WRLMRLLPAL IERPHFEPLR RFLTDDSDLR KRYQLAERLA DLFDQYQVYR ADWLKDWASG EHVINTARGE RKVLPPGNRW QAELWRALLE DVGEQGMAQS RAGVHQRFIE RINSLEQAPA GLPPRVIVFG ISSLPAQALE ALAGLSRFSQ VLLCVHNPCR HHWADIVADK DLLRHQYKRQ QRKQGMPLQL DDQTLHQHAH PLLAAWGKQG RDYINLLDSY DDPGSYQGVF SDGRIDLFSD GSPTTLLNEL QDDILELRPL AESRERWPPV DTTKDRSIRF HVAHSPQREV EILHDQLLAR FSADPTLRPR DVIVMLPDID TYAPHIRAVF GQLQRNDPRY IPFTLTDQGQ RGREPLLIAL EHLLKLPDSR FAVSEVLDLL DVPAVRARFG IRENDLPTLH RWIEGAGIRW GLDAAQRASL GLPAGLEQNS WRFGLRRMLL GYAVGVGEAC DGIEPYDEIG GLDAALIGPL VALLDALEVA CQALSEPATV SQWGERLHAL LHVFFLAEDE GDEFLLMQLQ DLRDSWLEVC ETVGLHDPLP LTVVREAWLS GLDQGKLSQR FLAGSVNFCT LMPMRAIPFR VVCLLGMNDG DYPRAQPPLD FDLMASDYRP GDRSRREDDR YLLLEALLSA RDQLYVSWVG RSIRDNSERP ASVLIGQLRD HIAAGWHLAD AQQGQPAKPG EQLLHALTQE HPLQPFSPRY FQKGSPLFSY AHEWQVLHQQ GEADEQSEPG LPPYQDAEAL SLHQLNDFLR HPVRHFFSQR LKVYFEALEA PTPDEEPFVL DTLQRYGASE SLLGAALAEP DNAEQALRAQ ARRLQACGLL PLAGFGELLQ NELIEPLPDL LQRHQQLLQR WPQLVEGALP VHFEHGQHRL EGWLGRVFQA EDQSLLSITT VPNTISAGRN NLKWHRLIAP WATHLAACAA GYPYNSALVA SDLTLLLAPL PQALAAQLLG DLLVARQAAM NAPLPVAAKT AFAWLAQDDA DKAMAAAARA YEGDERTSFG ERSESIALAR QFRDFAALTA DETFEGWCET LYRPLFTAPW QTLGNPEKGA
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