| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4452 |
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| Symbol | |
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| ID | 5191294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4976737 |
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| End bp | 4978191 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640588927 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001269756 |
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| Protein GI | 148549654 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0511722 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.669116 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCGG GATTACGCTT GAGCCCTTTG CTGCTGGCTG TGCTGCTGAC CGGTTGCACC
CTGGGCCCGG ATTTCCTGCG CCCAGATAGC CAGGCCCCGC AGCAGTGGGC GCCGCTGCAA
GGCGAGGCGG CGGCCAGCCA GCCGCAGGCC GAACCGCTTG AACTGCGCTG GTGGGAAACG
TTCCACGATG CCCGCCTGAG CGCTTTGATC CAGCGCGTTG CCGAACGCAA CCTCGACCTG
CAGATGGCCA GCGCGCGGCT GCTGCAAAGC CGTGCCCTGC GCAGTACCTT GGCTGCTGAC
GAAGTACCGT CGGTGGACGT GAATGCCGGT TACAGCCGCG CTCGTAACAG CGCCGATGGC
TTGAGCGATC CGTCCGGCAA AGCCGGGAAA GAAGCCTTCA ACCTTTGGCA GGGCGACCTG
GTGGCTGGTT GGGAACTGGA CCTGTGGGGC CGTGTGCGGC GTCAGGTCGA GGCTGCCGAT
GCCACGGTCG AAGTGGCCGA GAATGACCGC CGCGGTGTGC TGTTGGCACT GCTTTCGGAA
ACCGCCGGCA ATTACATCCA GCTGCGTGCC GTGCAGCACA CCCTCGATGT GACGCAGGAT
AACCTCAGGG TCGCCCGGCA CAGCCTGAAG CTGTCCCAGG ACCGCCAGGC CGAAGGCGTT
GCCACACGCC TGGATGTGGC CCAGGCCAGC GCCCAGGTCG CTTCTATCGA AGCGCGCCTG
CCAAGTCTGG AAGCGCGGCG TGATGACCTG ATCAATGCCC TCAGCCTGCT CGCTGCCGAG
CCGCCGCGCA GCCTCCAGGC CGAATTGCTG CCAGGCGGCG AGCTGCCTGC GCCGCAGCAG
AAGTTTGCCA TCGGCTTGCC GTCCGAACTG GCCGAGCGCC GCCCGGACAT CCGCCAGGCC
GAGGCCCGCC TGCATGCCGC CACTGCCAGT ATTGGCGTGG CCAAGGCGGA TTTCTACCCG
AGTATCCGCC TGTCGGGCAG TGTCGGCTTC CAGGCGATGC AGCTGTCGGA TTTCGGTGGC
TGGGATTCGC GCCGGTTCGC CTTCGGTCCA CAGATGTCGC TGCCAATTTT CGAGGGCGGC
CGGCTCAAGG GCACCTTGGA ACTGCGCGAG GCGCAACAGC AGGAAGCCGC GCTGAACTAT
CGCAAGGTGG TGCTGGGGGC CTGGCATGAA ATTGACGATG TGCTACGCCT GTACAACGCC
AGTCAGTTGC GCCGTGATCA CCTTGCCGAG GCCGTGCGGC AAAACCGTAT CGCCCTGGAA
ACCGCCCAGC GCCAGTATGT GGAAGGGGCG GTGGACTTTC TCAATGTGCT GACGGTGCAA
GGCGCGCTGC TGGCCAGCGA GGAGCAATGG ATCGACAGCT CGGCGGCGGT GTCGCAGGCG
CTGGTGGGGC TTTACAAGGC ACTGGGCGGT GGCTGGCAGG CGTTTGACGA GCAGCTGCCG
AATGCTCACA GCTAG
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| Protein sequence | MKPGLRLSPL LLAVLLTGCT LGPDFLRPDS QAPQQWAPLQ GEAAASQPQA EPLELRWWET
FHDARLSALI QRVAERNLDL QMASARLLQS RALRSTLAAD EVPSVDVNAG YSRARNSADG
LSDPSGKAGK EAFNLWQGDL VAGWELDLWG RVRRQVEAAD ATVEVAENDR RGVLLALLSE
TAGNYIQLRA VQHTLDVTQD NLRVARHSLK LSQDRQAEGV ATRLDVAQAS AQVASIEARL
PSLEARRDDL INALSLLAAE PPRSLQAELL PGGELPAPQQ KFAIGLPSEL AERRPDIRQA
EARLHAATAS IGVAKADFYP SIRLSGSVGF QAMQLSDFGG WDSRRFAFGP QMSLPIFEGG
RLKGTLELRE AQQQEAALNY RKVVLGAWHE IDDVLRLYNA SQLRRDHLAE AVRQNRIALE
TAQRQYVEGA VDFLNVLTVQ GALLASEEQW IDSSAAVSQA LVGLYKALGG GWQAFDEQLP
NAHS
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