| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3954 |
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| Symbol | |
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| ID | 5192936 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4459607 |
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| End bp | 4461439 |
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| Gene Length | 1833 bp |
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| Protein Length | 610 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640588427 |
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| Product | ABC transporter related |
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| Protein accession | YP_001269262 |
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| Protein GI | 148549160 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00633219 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGCTTGATG TACCAGGGTC ACCCGACCCG GTACCGGGCA AGCCATACAC TGCGGGCGAT
CGACTGAGCT GGGCGGAAAT CCGCCGCCTG GCCCTGCATC ACAAGAAGAA CCTCTGGTCC
GCCAACCTCA TTGCGTTACT GGCGGCGTGT TGCAGTGTGC CCATTCCGCT GCTGCTGCCG
CTGTTGGTGG ACGAAGTACT GCTCGGCCAT GGCGATGCCG CGCTGAAGTG GATGAACCAC
CTGCTGCCGT CCAACTGGCA GGTAGCAGCC GGCTACATCG GCCTGATGCT GGCGCTCACC
CTGTGCCTGC GCCTGGCTGC GCTGGCCTTC AACGTGATCC AGTCCAAGCT GTTCGCCGGG
CTGGCCAAGG ACATCGTCTA CCGCCTGCGC ATCCGCCTGA TCGAGCGCCT CAAACGTATT
TCGCTGAAAG AATACGAAAG TTTGGGCAGC GGTACGGTGA CCACCCACCT GGTCACCGAC
CTGGACACCC TCGACAAGTT CGTTGGCGAA ACCCTCAGCC GCTTCCTGGT GGCCATGCTG
ACACTGACCG GCACGGCGGC GATCCTGATC TGGATGCACT GGCAGCTGGC CTTGCTGATC
TTGCTGTTCA ACCCGCTGGT GATCTACTTC ACCGTGCAGT TGGGCAAGCG CGTCAAACAC
CTGAAAAAGC TTGAAAACGA CAGCACCGCG CGCTTTACCC AGGCGCTGGC GGAAACCCTC
GATGCCATTC AGGAAATCCG CGCTGGCAAC CGCCAGGGCT ACTTCCTTGG CCGCCTGGGC
CTGCGTGCCC GCGAAGTGCG CGATTACGCC GTGGACTCGC AATGGAAAAG CGATGCCAGT
GGCCGTGCCA GTGGCCTGCT GTTCCAGTTC GGCATCGACA TCTTCCGCGC GGCGGCCATG
CTGACCGTGC TGTTTTCCGA CCTGTCGATC GGCCAGATGC TGGCGGTGTT CAGCTACCTG
TGGTTCATGA TCGGTCCGGT GGAGCAACTG CTTAATCTGC AATATGCCTA CTACGCCGCC
GGCGGTGCGC TGAGTCGCCT CAACGAGCTG CTGGCGCGTG CCGACGAGCC GCAATACCCG
GCCGCCAGCG ACCCGTTCGC CGGCCGCGAA ACGGTGGGCA TTGAAGTGCG CGACCTGCGC
TTTGCCTATG CCGACGAGCC GGTGCTCGAG CACCTCGACC TGTCCATCGC TGCGGGTGAG
AAGGTGGCGA TTGTCGGTGC CAGCGGCGGC GGCAAGAGCA CGCTGGTGCA GCTACTGCTG
GGCCTTTACA GCGCCCAGGC CGGGACCATC CGCTTTGGCG GGGCCAGCCT GCAGGAAATC
GGCCTGGAAA CCCTGCGCGA GAACGTCGCG GTGGTGTTGC AGCACCCGTC GCTGTTCAAC
GACAGCGTGC GTGCCAACCT GACCATGGGC CGCGACTGCA GCGATGATGC GTGCTGGCAG
GCGCTGCGCA TCGCCCAGCT GGATGCCACC ATCGCTGCCT TGCCGCAAGG CCTGGACAGT
GTGGTGGGGC GTTCAGGCGT GCGCTTGTCC GGTGGCCAGC GCCAGCGTTT GGCCATTGCC
CGCATGGTAC TGGCTGAGCC CAAGGTGGTG ATCCTCGACG AGGCCACCTC AGCCCTGGAT
GCCGCCACCG AGTACAACCT GCATCAGGCC TTGGCGTGCT TCCTCAGCGG CCGCACCACG
CTGATCATCG CCCATCGGTT GTCGGCGGTG AAACAGGCCG ACCGGGTGCT GGTGTTCGAT
GGCGGGCACG TGGCCGAAGA CGGCGACCAT CAGCAGCTGA TTGCCGAGGG TGGGTTATAC
GCCAAGCTTT ACGGGCATCT GCAGCAGAGC TGA
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| Protein sequence | MLDVPGSPDP VPGKPYTAGD RLSWAEIRRL ALHHKKNLWS ANLIALLAAC CSVPIPLLLP
LLVDEVLLGH GDAALKWMNH LLPSNWQVAA GYIGLMLALT LCLRLAALAF NVIQSKLFAG
LAKDIVYRLR IRLIERLKRI SLKEYESLGS GTVTTHLVTD LDTLDKFVGE TLSRFLVAML
TLTGTAAILI WMHWQLALLI LLFNPLVIYF TVQLGKRVKH LKKLENDSTA RFTQALAETL
DAIQEIRAGN RQGYFLGRLG LRAREVRDYA VDSQWKSDAS GRASGLLFQF GIDIFRAAAM
LTVLFSDLSI GQMLAVFSYL WFMIGPVEQL LNLQYAYYAA GGALSRLNEL LARADEPQYP
AASDPFAGRE TVGIEVRDLR FAYADEPVLE HLDLSIAAGE KVAIVGASGG GKSTLVQLLL
GLYSAQAGTI RFGGASLQEI GLETLRENVA VVLQHPSLFN DSVRANLTMG RDCSDDACWQ
ALRIAQLDAT IAALPQGLDS VVGRSGVRLS GGQRQRLAIA RMVLAEPKVV ILDEATSALD
AATEYNLHQA LACFLSGRTT LIIAHRLSAV KQADRVLVFD GGHVAEDGDH QQLIAEGGLY
AKLYGHLQQS
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