Gene Pput_3905 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_3905 
Symbol 
ID5195418 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp4385739 
End bp4386803 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content53% 
IMG OID640588378 
Productpolysaccharide export protein 
Protein accessionYP_001269213 
Protein GI148549111 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1596] Periplasmic protein involved in polysaccharide export 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.132595 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCAATT TGAAAGTGGC AGTTTTGGCG CTGGCGTCGC TAAGCCTTAC TGGCTGTGGT 
GGCACGTTGT CCGGCGCCGG CCCATATAAG GGCACGATTG AGAGCAAGAA CGAGGCATAC
AATCTTGTAG ATATTGATGC CAGCACCATC GGCCCATATT TGGCGGGAGC TCCACGCCCT
GCATTGGCCT CTGTCACCAA ACCACAGTCG CCGGAGGTGC GCCTAGCAGC AGGAGATACT
CTGGCTGTTT TGATCGCTGA CACAGCACCG GCAGAGTCCG CCCTGTTTGC CCCGCTGGCC
ACTGGCGGCA CTCAACTGAA GTCACGAATA GATGCACAAG GAATGCTCTC TCTGCCTTAT
GTAGGTCGCC AATTTGTAGC TGGCATGACG CTTAACCAAG TTGAAAGCAT GATTCGCCAA
AAACTTAAGG GTATTACCAC CGACGTACAA ACTCACGTTG AACTGGTAGG CGATCTTTCC
GGCTCTGTAC TCGTCGCTGG CGCAGTAAAG ACCCCCGGCC GCTTCAGCAC CTTGCAAGGA
CCACTGACGC TGCTGGATGC AGTGAACCAA GCTGGTGGTC CAGTACTTGA ACCACACTTG
GTCAATGTAA CCGTACGAAC CGGAAACCAA GTGCAACAAT TCAACTACGA GGATGTGCTT
GCCGGCAATA ATATGGTACT ACGCCCAAAC TCCGAGGTAG TCCTTGACCG AGCGCGTCAA
CGATTTGTAG CAATGGGTGC TGTAGCAGAG CCAGGACTTA AGGATCTACC GAGCCAAAAC
ACAAATCTTC TGGACGCACT GGGTAGCGTC GGCGGCTTGC GAGAGACCAA TGCTAATCCT
GAAGGTGTGT TTGTGTTCCG CATGGGCAAT GCCGGCAACT CGAAACCTAC CGTACTACGC
CTGAATATGC GCGATCCTGC AGCCATCTTC TACGCGCGAC AAATCGCCAT CAGACCTGAC
GACACTATCT ACGTAACGAA CGCAGCTGTT TATGAATGGC AAAAGGTTAT CAACCCAATT
GTCCAGACAA TGCTACTCGG CCGCGTAGTT GGCGCAACCA ACTAA
 
Protein sequence
MFNLKVAVLA LASLSLTGCG GTLSGAGPYK GTIESKNEAY NLVDIDASTI GPYLAGAPRP 
ALASVTKPQS PEVRLAAGDT LAVLIADTAP AESALFAPLA TGGTQLKSRI DAQGMLSLPY
VGRQFVAGMT LNQVESMIRQ KLKGITTDVQ THVELVGDLS GSVLVAGAVK TPGRFSTLQG
PLTLLDAVNQ AGGPVLEPHL VNVTVRTGNQ VQQFNYEDVL AGNNMVLRPN SEVVLDRARQ
RFVAMGAVAE PGLKDLPSQN TNLLDALGSV GGLRETNANP EGVFVFRMGN AGNSKPTVLR
LNMRDPAAIF YARQIAIRPD DTIYVTNAAV YEWQKVINPI VQTMLLGRVV GATN