| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3896 |
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| Symbol | |
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| ID | 5192997 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4377763 |
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| End bp | 4378464 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640588369 |
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| Product | orotidine 5'-phosphate decarboxylase |
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| Protein accession | YP_001269204 |
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| Protein GI | 148549102 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0284] Orotidine-5'-phosphate decarboxylase |
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| TIGRFAM ID | [TIGR01740] orotidine 5'-phosphate decarboxylase, subfamily 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0903268 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCCT GCCAGACGCC CCTGATCGTC GCCCTGGATT TCCCTACCCG TGAGGCCGCC
CTGAAGCTGG CTGACCAGCT TGACCCTGCG CTGTGCCGGG TGAAGGTTGG CAAGGAGCTG
TTCACCAGCA GCGCTTCGGG CATTGTCGAA ACCCTGTGTG ACAAGGGCTT CGAAGTGTTC
CTGGACCTCA AGTTCCACGA CATTCCCAAC ACCACCGCCA TGGCGGTAAA GGCCGCCGCC
GAGATGGGCG TGTGGATGGT CAACGTACAT TGCTCCGGTG GCCTGCGCAT GATGGTGGCC
TGCCGTGAAG AGCTGGCCAA GCGCAGCGGC CCGCAGCCGT TGCTGATTGG CGTGACCGTG
CTGACCAGCA TGGAGCGTGA AGACCTGGCC GGCATTGGCC TGGATGTCGA CCCCCAAGAG
CAAGTGCTGC GTTTGGCGGC GCTGGCGGAA AAAGCGGGTA TGGACGGTTT GGTGTGCTCG
GCGCTCGAGG CCCCGGCACT GAAGGCGGCG CACCCATCGT TGCAATTGGT GACCCCGGGC
ATTCGCCCGG CGGGCAGCGC GCAGGATGAC CAGCGCCGCA TCCTCACCCC GCGTCAGGCA
CTGGATGCCG GTTCGGACTA CCTGGTGATT GGCCGGCCGA TCAGCCAGGC TGCAGACCCT
GCGCAAGCGT TGGCAGCGGT GGTGGCGGAG ATCCGTGGGT AA
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| Protein sequence | MSACQTPLIV ALDFPTREAA LKLADQLDPA LCRVKVGKEL FTSSASGIVE TLCDKGFEVF
LDLKFHDIPN TTAMAVKAAA EMGVWMVNVH CSGGLRMMVA CREELAKRSG PQPLLIGVTV
LTSMEREDLA GIGLDVDPQE QVLRLAALAE KAGMDGLVCS ALEAPALKAA HPSLQLVTPG
IRPAGSAQDD QRRILTPRQA LDAGSDYLVI GRPISQAADP AQALAAVVAE IRG
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