| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3714 |
|---|
| Symbol | |
|---|
| ID | 5193174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 4159171 |
|---|
| End bp | 4160889 |
|---|
| Gene Length | 1719 bp |
|---|
| Protein Length | 572 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640588170 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001269022 |
|---|
| Protein GI | 148548920 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.325605 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGACT TGTGGCCCCA ATGGCTGCGC CCGCTCTGGC TGCTGGCGGT TCCCGTGCTC
GGCTGGCTGC TGTACAAGCT GTGGCACCGG CGCAAGCGTG CCGGGCGCTG GCAGATGATT
CTGCCGCCCG CCTTCCATGG TGTACTGCTG GGTGGCGGCA GCGGCAGCAC CAGCAAACTG
CCGTGGGTGG CGCTGGGCCT CGCCTGGTTA CTGGTGATCC TGGCGCTGCT CGGGCCCAGC
TGGCAGCGGC TGGAAGAAAG CCGTCAGCGC CCGGCCGACC CCCTGGTGAT CCTGCTCGAA
CTGACCCCGC AAATGCTCGC CGAGGACAGC CCGCCCAACC GCCTGGAACA GGCCCGGCGC
AAGATCCTCG ACCTGCTTGA ACACCGCCGC GACAGCCAGA CGGCGCTGGT GGTGTATGCC
GGCTCCGCGC ACACCCTGGT GCCGCTGTCT GACGACCTGG CCACCACCCG CAACTTGCTC
GAGGCCATCG ACCCGTCGAT CATGCCAAAA CCCGGCCAGC GTGCCGACCT GGCCGTGCAA
AAAGGCCTGG CGCTGCTGGC CCAGAGCGGC CTCGGCCAAG GCCGCCTGCT GCTGGTAGGC
TCGGCACTCA GCGCCGCCGA GCGCCAGGGC ATCACCCAGG CCCTCGGCCG CCAGGGCCCA
AGCCTGCTGA TGCTGGGCAT CGGCAGCCGC GAAGGCGCCC CGGTGCGCCA GGCCAATGGC
GAATACCTTA AAGACGACCA GGGCGGCATC CTCTTGCCTC GCCTGGACAG TGCCAGCCTG
AAGGGTTTTA TCAGCGGCAC GGGCGGGCGC TACCGGCACG CCCGCATTGA CGACCTCGAC
CTGCGTGGCC TGGGCCTGTT CGACAACCCG CGGAGCGGGC GCAATGACGG CCAGACCCTG
CAACTGGACA GCTGGGCCGA CCAAGGTTAC TGGCTGCTGA TTCCGTTGTT GCTGCTGGCC
GCCTGCGCTG GCCGGCGCGG CTGGCTGTTC TGCCTGCCGC TGCTGCTGGC CTTGCCGCAG
CCTAGCCAGG CTTTCGAGTT CAACGACCTG TGGCTGCGCC CCGACCAGCA AGGCCAGAAG
CTGCTGGAGC AAAACCGCCC GGCCAGCGCT GCACGTCACT TCCAGAACCC GCAATGGCGC
GGCATGGCCC TGTACCAGGC CGGCGACTAT GCCGGGGCCG CCGAGGCATT TTCCCAAGGC
GACACTGCAG CAGCCCACTA CAATCGAGGC AATGCCCTGG CCCATAGTGG CGAGCTGGAC
GCCGCCCTGG ATGCCTACGA GCAAGCCCTG GAGCGCCAGC CCGACCTGCA GGCCGCGCTG
GACAACCAGG CGCTGGTGCA GCAACTGCTG CAGCAACGTG AAGCCAAGGC CGAGGAACAA
CCGCCCGGCA GCGATGCCCA AGACACGCCC GGCAGCGAAA CCGAAGGCAA CAGCAGCTCG
GCCAGCAGCC CGGCCCAAGG CACACCCGGC GACGACCAAC AGGCCAGCCC CGAACAACCC
GGCGAAAGCA GCAGCAACAG CCAGGCCGCC CCCGGCAACC AGGCCGGGGG TGACGACAGC
GTCATCCAGC CGCCACAGCG CCCGGTGTCG ACCAGCCTCG ACGGCGAACA GCGCCAAGCC
CTGGAGCAAT GGCTGCGGGA AATTCCCGAC AACCCGGCAG AGCTGCTGCG ACGCAAATTC
TGGTATGAAC AGCAATTGCA TCAGGAAAAA TCACGATGA
|
|---|
| Protein sequence | MIDLWPQWLR PLWLLAVPVL GWLLYKLWHR RKRAGRWQMI LPPAFHGVLL GGGSGSTSKL
PWVALGLAWL LVILALLGPS WQRLEESRQR PADPLVILLE LTPQMLAEDS PPNRLEQARR
KILDLLEHRR DSQTALVVYA GSAHTLVPLS DDLATTRNLL EAIDPSIMPK PGQRADLAVQ
KGLALLAQSG LGQGRLLLVG SALSAAERQG ITQALGRQGP SLLMLGIGSR EGAPVRQANG
EYLKDDQGGI LLPRLDSASL KGFISGTGGR YRHARIDDLD LRGLGLFDNP RSGRNDGQTL
QLDSWADQGY WLLIPLLLLA ACAGRRGWLF CLPLLLALPQ PSQAFEFNDL WLRPDQQGQK
LLEQNRPASA ARHFQNPQWR GMALYQAGDY AGAAEAFSQG DTAAAHYNRG NALAHSGELD
AALDAYEQAL ERQPDLQAAL DNQALVQQLL QQREAKAEEQ PPGSDAQDTP GSETEGNSSS
ASSPAQGTPG DDQQASPEQP GESSSNSQAA PGNQAGGDDS VIQPPQRPVS TSLDGEQRQA
LEQWLREIPD NPAELLRRKF WYEQQLHQEK SR
|
|---|
| |