| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3488 |
|---|
| Symbol | |
|---|
| ID | 5191635 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 3895507 |
|---|
| End bp | 3896385 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640587940 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001268798 |
|---|
| Protein GI | 148548696 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0702962 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTTTT CCAGCGACAA CATCCAGCTG TTTCTGGCCG TGCTCGACCA CGGTTCGTTT
TCTTCCGCTG CGCGTGCCCT CAAGCGCGTG CCTTCAGCCG TGAGCATGGC CATTGGCAAC
CTTGAAGCAG AACTTGGCTA CAGCCTGTTC GAACGTGGCC CGCGTGAAGT TCGGCCAACC
GCACAGGCCT TGGCCCTGGA GCCACACGCC AGGCTGATTG CCGAACAACT GGGGCTGCTG
CAGGTTCATG CCCTGGAGTT GTCCCAAGGG CTGGAGAGCA GCCTGACCCT GGCGGTGGTA
CCCGACATCG ATCACCGCCC GCTGCTGGCG GCCATCGCCA ACCTCGGTGA GCGCCACCCC
TTGCTGGACA TTGCCCTGCT CAGCGCCCCG CAGGAAGAAG CCCTGCACTT GCTGGACAGC
GGTCGTGCCG ACCTCTGCAT AGCCTTTGCC GGCCTGCAGG TCGATGCCCG TCGCGGCTTC
CAGCACATCG GCATGGAGTC GCTGGTAGCC ATCCTGTCGC CGGCCCACCC GGCCTTGCGT
GAGGGGCGTA TACACTACCT TGAGGACCTG ACCCAGGTGC GTCAGATTCT GGTGCGCAGC
CGCGATCTGC CTCTGGCTGA CCCTCGCCCG CTGATCGGCG CCACACACTG GTCCACCGAC
AGCTTCGACC TGGCGCTGCA GATGGTTGAA GCTGGCTTGG GCTGGGGTGA TCTGCCGTTG
TCGCGGGTCG CGCCGCTGCT GGCCAGCGGG CGCCTGGTGC GCCTGGAGTT CCGCAATACA
CACAACGCGC TGCAACTGCC CGTGCATATC CTGTGGCGCA AACAACAGCC GCTGCAGCAA
GCCGCACGCC TGCTGATCAA GCAGTTGGCT GACCCGTGA
|
|---|
| Protein sequence | MNFSSDNIQL FLAVLDHGSF SSAARALKRV PSAVSMAIGN LEAELGYSLF ERGPREVRPT
AQALALEPHA RLIAEQLGLL QVHALELSQG LESSLTLAVV PDIDHRPLLA AIANLGERHP
LLDIALLSAP QEEALHLLDS GRADLCIAFA GLQVDARRGF QHIGMESLVA ILSPAHPALR
EGRIHYLEDL TQVRQILVRS RDLPLADPRP LIGATHWSTD SFDLALQMVE AGLGWGDLPL
SRVAPLLASG RLVRLEFRNT HNALQLPVHI LWRKQQPLQQ AARLLIKQLA DP
|
|---|
| |