| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3305 |
|---|
| Symbol | |
|---|
| ID | 5195521 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 3722686 |
|---|
| End bp | 3723606 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640587752 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001268615 |
|---|
| Protein GI | 148548513 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.655223 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0876929 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGAAC GAATTCAGGC CTTGCACGCG CTGCGTGCCT TCGAGGTGGC CTCTCGCTAT
GGCTCTTTCA CCCGCGCTGC TGAGGAGCTG GCCCTGACCC AGGGCGCCGT CAGCCACCAC
ATCAAGACCC TCGAAGCCCT GTTTGGCTGC GACCTGTTCG AACGTCGGGG CCCGAAGCTG
AGCCTGACCG AGCACGGCCG CCTGCTTGCG CAAGAGCTGA AGGTCGGCTT CAAGATCATC
GAGAATGCCT GCGCACTGCT GCGTCAGGAT CGCTACGGCC TGCGCCTGAA GGCGCCGTCC
ACGCTCACGG TGCGCTGGCT GCTGCGGGCG CTGGATGCGT TCAAGAAGGT CGAGGACAAC
TGCAGCGTGC AGCTTTCCAG TGTGTGGATG GATATCGACA GCGTGGACTT CTATTCCGAG
CCCTACGACT GCGCCATTCT CCTGGCCAGC GGGCGATTTC CCGCCGATAT CGAGAGTTTC
AAGCTGTTCG ATGAATGGCT GATTCCGGTC TGTCATCCGG ATTACATGAC GCAGGCACAA
CCGCAACTGT CCGACCTGCC CCGATGCGAG TTCCTGCACC CGTCACCCGA CCGGCGTGAC
TGGCGGCGTT GGCTGGCGCG AATGGATGCG CTGGACATCA GCATCGACCA GGGGCAGGTG
TTCGATACCC TCGACCAGGG CATATCGGCC GCCCAGCAGG GCTTAGGCAT TTCAGTGGTC
GATCTGGTAC TGGCCAGCAC CGACCTGGCC GCCGGGCGCC TGGTCACGCC TTTCAAGCAT
GCCGTGGCCA CCGGCGACGG TTACTACATG ACCTGGCTCA AGGCCAGCCC AAAAGCGCGG
CAAATGAACA AGCTGCGTGA CTTCCTGCTC GGCCAGGTAC CGCCGCTGGC CTACAAGGAC
ATCAACTACC TGTACGGTTG A
|
|---|
| Protein sequence | MSERIQALHA LRAFEVASRY GSFTRAAEEL ALTQGAVSHH IKTLEALFGC DLFERRGPKL
SLTEHGRLLA QELKVGFKII ENACALLRQD RYGLRLKAPS TLTVRWLLRA LDAFKKVEDN
CSVQLSSVWM DIDSVDFYSE PYDCAILLAS GRFPADIESF KLFDEWLIPV CHPDYMTQAQ
PQLSDLPRCE FLHPSPDRRD WRRWLARMDA LDISIDQGQV FDTLDQGISA AQQGLGISVV
DLVLASTDLA AGRLVTPFKH AVATGDGYYM TWLKASPKAR QMNKLRDFLL GQVPPLAYKD
INYLYG
|
|---|
| |