| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2987 |
|---|
| Symbol | |
|---|
| ID | 5193468 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 3375574 |
|---|
| End bp | 3376407 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640587433 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001268299 |
|---|
| Protein GI | 148548197 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0411] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.657234 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAACT TCCCGTTGCT GGAACTGGAG GGCATCAGCC TTTCGTTCAA GGGTGTGAAG
GCCATCAGCG ACATCGGCTT CAGCGTCGCC GAAGGCGAGA TCTGTGCGCT GATCGGGCCC
AATGGCGCGG GCAAGAGCTC GCTGCTGAAC ATCATCAATG GCGTCTACCG GGCGCAGCAG
GGGCGTATTC GTTTTGCCGG GCAGCAGCGT CGGGTGATGC ACCCACATGC AGCGGCACGC
GACGGCATCG CTCGCACCTT CCAGAACATC GCGCTGTTCA AGGGCATGAG CGTGCTCGAC
AACGTGCTCA CCGGGCGCAA CCTCAAGCGC CGCAGTTCCT GGCTGGAGCA GGCGTTGCGC
ATCGGCCGCG CGCCGGGCGA GGACGATCGC CAACGCGCCG CCGCCGAGCG GGTCATCGAG
TTTCTGCGCA TCCAGCCGTG GCGTGACGAA ATCGTTGGCA CCTTGCCCTA TGGCCTGCAG
AAGCGGGTCG AGCTGGCCCG TGCGCTGGCC GCCGAGCCGC GCCTGCTGCT GCTCGACGAG
CCGATGGCCG GGATGAATGC CGAGGAGAAG CGCGAAATGA GCCGCTTCAT CGTCGAGATC
AACCGTGAGT TCGGCATGAC GGTGGTGCTG ATCGAGCACG ACATCGGCGT GGTCATGGGC
ATTTCCCACC ATGTGGTGGT GCTCGATTAC GGCCGCAAGA TCGGCGACGG CTCCCCCGAG
CAGGTTCGCC GCAACCCCGA CGTGATCGCG GCCTATCTGG GTGTCCGCCC GGCGGCAGCT
TCGGGGCTGT TCCCACACAG GAGCGCGACA TGGCATTCTT TTTCGAAGTG CTGA
|
|---|
| Protein sequence | MSNFPLLELE GISLSFKGVK AISDIGFSVA EGEICALIGP NGAGKSSLLN IINGVYRAQQ
GRIRFAGQQR RVMHPHAAAR DGIARTFQNI ALFKGMSVLD NVLTGRNLKR RSSWLEQALR
IGRAPGEDDR QRAAAERVIE FLRIQPWRDE IVGTLPYGLQ KRVELARALA AEPRLLLLDE
PMAGMNAEEK REMSRFIVEI NREFGMTVVL IEHDIGVVMG ISHHVVVLDY GRKIGDGSPE
QVRRNPDVIA AYLGVRPAAA SGLFPHRSAT WHSFSKC
|
|---|
| |