| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2923 |
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| Symbol | |
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| ID | 5190233 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 3309666 |
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| End bp | 3311630 |
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| Gene Length | 1965 bp |
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| Protein Length | 654 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640587370 |
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| Product | DNA topoisomerase III |
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| Protein accession | YP_001268236 |
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| Protein GI | 148548134 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.177177 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCTGT TCATCTGCGA GAAACCATCC CAAGCCCGCG ATATCGCCCG GGTGCTGCAG
GCCAGCCACC GCGCTGATGG CTGTCTGAAG GGGCAGAACG TCACCATCAC CTGGTGCGTC
GGCCATCTGC TGGAGACCGC TCCGCCTGAA ACCTATGGCG ACTACAAGCG CTGGTCGCTG
GACGATCTGC CGATCATTCC CAGTCAATGG AAATTGGTGG CCAAGCCCAA GGTCGCTGGC
CAGCTCAAGG TGATCAGTCA ACTGCTGCGC ACCTGCAGCG AGGTGGTCAT CGCTACCGAT
GCCGACCGCG AAGGCGAGAT GATCGCCAGG GAGATTCTCG AGCGCTGCCA GTATCAGGGG
CCTATTTTGC GCCTGTGGCT CTCCGCGCTG GACGAGGCGT CGATCCGCCG AGCCCTGGGC
GCCTTGCGTC CAGGGGAGGA AACCTTGCCG CTGTATCACT GTGCGCTGGC CCGCTCCCGT
GCCGACTGGC TGGTCGGCAT CAACCTGAGC CGGCTGTTCA CGCTGCTCGG CCGCCGCTCC
GGTTTCGATG GACTGCTGCC GGTGGGACGC GTACAGACGC CCACCCTGCG CTTGGTGGTC
GAGCGCGACC GGGCGATCGC CAGCTTTGTG CCGCTACCGT TCTGGACCGT CGATGTGCAC
CTGGAGCAGG ACGGGATCCG CTTTCAAGCG CGCTGGCAGG CCCCGACCGC GGTCAGCGAT
GCGGTTGGAC GCTGTATTGA CGAAACCGCC GCACAGCAGG CGCAGAGACG CTTCATTCAA
GCCGGCACCG CCGAGATCGA TAATGCCGAA GTCGAGCACG TGCGCGAAGG CCCGCCGCTA
CCGTTCGACC TGGGCACGTT GCAGGAAATC TGCTCGGCCA AGCTCGGATT GGGTGCACAG
GAAACCTTGG CCACCGCCCA GGCCCTGTAT GAAACCCACA AGGCGACGAC GTACCCGCGG
ACCGATTGCG GCTATTTGCC GGAGAGTATG CTCGATGAGG TGCCTCGCGT GCTTCACGCC
CTGGCCGCTG CACCATCGCT GGGGGCAGTG CTCAAGGAAG TCGACCCCAG CCGCCGCTCC
CGTGCCTGGA ACAGCAGCAA GATCACCGCG CACCACGGCA TCATCCCCAC CGCCGTCACG
CTGGATCTGG CGCAGCTCTC CGAACGCGAG CGGGCGGTTT ACACGCTGAT CCGCGCACGC
TACCTCGCGC AGTTCATGCC CGAGCACGAA TACCTCAAAA CCCAGGCGCT GCTGCACAGC
CAGGCAGATC AACTGGTGGC GCGCGGCAAA CAGATCCTGG TCCGCGGCTG GAAGGCAGTG
ATCAACGAGG CCGACGGTAA CGAGCCGGCC GAACAGGCGC AGCGACTACC CACGTTGCGT
GAATCCGCGA CGGTGGCGCT GATCGACGCC ACGCTCAATG CACAGCGCAC ACAACCGCCC
AAGGCCTACA CCGAAGGCAC GCTGGTCAAA GCCATGAAAA CCATCGCCAA CCAGGTGGCC
GATCCGCGGC TGAAGCAGAA GCTCAAGGAC AGTTGCGGGC TCGGTACCGA GGCCACCCGC
GCGGCCATCA TCCAGGGCCT GATCGATCAC GGTTACCTGA CCAAGAAGAA ACGCAGCCTG
GCTGCCTCAG CGGCGGCGCA TACCTTGATC GAAGCGGTGC CACCAGAGGT GGCCGACCCG
GTCATGACTG CGCTGTGGGA GCAGGCGCTG GATCGCATCG AATCGGGCCA GCTGAGTGTC
GATACCTTTC TCGCCAAGCA GGCAGAGTGG CTGACCCGCT TGGTGCGCAG TAACGCCACG
CTCACCCTGC GCCCGCCCCC CAGCAAGGGG CCCTTCTGCC CGGTGTGCCG CAGCACCATG
CGCCAGCGTA AAGGTCGCAC CGGCAGCTTC TGGTCGTGCA TCCGCTACCC CGAGTGCAAG
GGCACCAAAC CGGTGGCGAA AGCCAAGCGG GCGAAAAACG CATGA
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| Protein sequence | MRLFICEKPS QARDIARVLQ ASHRADGCLK GQNVTITWCV GHLLETAPPE TYGDYKRWSL
DDLPIIPSQW KLVAKPKVAG QLKVISQLLR TCSEVVIATD ADREGEMIAR EILERCQYQG
PILRLWLSAL DEASIRRALG ALRPGEETLP LYHCALARSR ADWLVGINLS RLFTLLGRRS
GFDGLLPVGR VQTPTLRLVV ERDRAIASFV PLPFWTVDVH LEQDGIRFQA RWQAPTAVSD
AVGRCIDETA AQQAQRRFIQ AGTAEIDNAE VEHVREGPPL PFDLGTLQEI CSAKLGLGAQ
ETLATAQALY ETHKATTYPR TDCGYLPESM LDEVPRVLHA LAAAPSLGAV LKEVDPSRRS
RAWNSSKITA HHGIIPTAVT LDLAQLSERE RAVYTLIRAR YLAQFMPEHE YLKTQALLHS
QADQLVARGK QILVRGWKAV INEADGNEPA EQAQRLPTLR ESATVALIDA TLNAQRTQPP
KAYTEGTLVK AMKTIANQVA DPRLKQKLKD SCGLGTEATR AAIIQGLIDH GYLTKKKRSL
AASAAAHTLI EAVPPEVADP VMTALWEQAL DRIESGQLSV DTFLAKQAEW LTRLVRSNAT
LTLRPPPSKG PFCPVCRSTM RQRKGRTGSF WSCIRYPECK GTKPVAKAKR AKNA
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