| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2844 |
|---|
| Symbol | ureC |
|---|
| ID | 5190569 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 3225691 |
|---|
| End bp | 3227394 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640587294 |
|---|
| Product | urease subunit alpha |
|---|
| Protein accession | YP_001268160 |
|---|
| Protein GI | 148548058 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0804] Urea amidohydrolase (urease) alpha subunit |
|---|
| TIGRFAM ID | [TIGR01792] urease, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.438037 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGTA TTTCCCGTCA GGCCTATGCC GACATGTTCG GCCCCACGGT TGGCGACCGC
GTGCGCCTGG CCGACACTGC GCTGTGGGTG GAGGTCGAGA AAGACTTCAC GATTTACGGC
GAAGAGGTGA AGTTCGGCGG CGGCAAGGTT ATTCGCGATG GCATGGGGCA GGGCCAGATG
CTGGCGGCCG AGGCCATGGA CCTGGTGTTG ACCAATGCGC TGATCATCGA CCACTGGGGC
ATCGTCAAAG CCGACATCGG CATCAAGCAT GGACGCATTG CGGTGATCGG CAAGGCGGGC
AACCCCGATG TGCAGCCGGG CGTGAACGTG CCGGTCGGGC CAGGGACCGA GGTGATCGCG
GCCGAGGGCA AGATCGTCAC CGCCGGGGGG GTCGATTCGC ATATCCACTT CATTTGCCCG
CAGCAGGTGG ACGAGGCATT GAACAGCGGT GTCACCACGT TCATCGGCGG TGGAACCGGG
CCGGCCACTG GCACCAATGC CACCACCTGC ACGCCCGGCC CCTGGTACCT TGCGCGCATG
TTGCAGGCCG CCGACAGCTT GCCGATCAAC ATCGGGCTGC TCGGCAAGGG CAATGCCTCG
CGGCCGGACG CGCTGCGCGA GCAGATTGGC GCAGGTGCTG TCGGGCTCAA ACTGCATGAA
GACTGGGGCT CTACGCCAGC AGCCATCGAC TGTTGCCTGG GCGTGGCCGA GGAAATGGAT
ATCCAGGTGG CGATTCACAC CGACACCCTC AACGAGTCGG GCTGTATCGA AGACACGTTG
GCGGCCATCG GCGACCGCAC CATCCACACC TTCCATACCG AAGGTGCCGG TGGCGGCCAT
GCCCCGGACA TCATCCGTGC GGCGGGGCAG GCCAACGTGC TGCCATCCTC GACCAACCCG
ACCCTGCCGT ACACGATCAA CACCGTGGAC GAGCACCTGG ACATGCTCAT GGTCTGCCAC
CACCTGGACC CGAGCATCGC CGAGGACGTG GCCTTCGCCG AGTCGCGCAT TCGCCGCGAA
ACCATCGCTG CCGAGGACAT TCTCCACGAC ATGGGCGCCT TTGCCATGAC CTCGTCCGAC
TCCCAGGCCA TGGGTCGGGT TGGCGAGGTG GTGCTGCGCA CCTGGCAGGT GGCGCACCAG
ATGAAGCTGC GTCGCGGGCC GCTGGCACCG GACACCCCGT ACAGCGACAA CTTTCGGGTC
AAGCGCTACA TCGCCAAGTA CACCATCAAC CCGGCACTCA CCCATGGCAT CGGTCACGAA
GTGGGCTCGG TGGAGGTCGG CAAGCTGGCC GACCTGGTGC TGTGGTCGCC AGCGTTCTTT
GCGGTCAAGC CGGCTTTGGT GCTCAAGGGC GGGATGATCG TCACCGCGCC CATGGGCGAC
ATCAACGGCT CCATACCCAC CCCCCAGCCG GTGCACTATC GGTCGATGTT CGGCGCGCTG
GGCGCGGCTC GGCATGCCAC ACGCATGACA TTCCTGCCCC AGGCGGCAAT GGACCGCGGG
CTGGCCGAGG CGCTTAACCT GCGCAGCCTG ATTGGCGTGG TCAACGGCTG CCGGCGGGTA
CGCAAGCCGG ACATGGTCCA TAACACCCTG CAGCCGCTGA TCGAAGTCGA TGCGCAGACC
TATCAGGTGC GTGCCGATGG CGAGCTGCTG GTCTGCGAAC CGGCCAGCGA ACTGCCGCTG
GCCCAGCGCT ATTTCCTGTT CTGA
|
|---|
| Protein sequence | MSRISRQAYA DMFGPTVGDR VRLADTALWV EVEKDFTIYG EEVKFGGGKV IRDGMGQGQM
LAAEAMDLVL TNALIIDHWG IVKADIGIKH GRIAVIGKAG NPDVQPGVNV PVGPGTEVIA
AEGKIVTAGG VDSHIHFICP QQVDEALNSG VTTFIGGGTG PATGTNATTC TPGPWYLARM
LQAADSLPIN IGLLGKGNAS RPDALREQIG AGAVGLKLHE DWGSTPAAID CCLGVAEEMD
IQVAIHTDTL NESGCIEDTL AAIGDRTIHT FHTEGAGGGH APDIIRAAGQ ANVLPSSTNP
TLPYTINTVD EHLDMLMVCH HLDPSIAEDV AFAESRIRRE TIAAEDILHD MGAFAMTSSD
SQAMGRVGEV VLRTWQVAHQ MKLRRGPLAP DTPYSDNFRV KRYIAKYTIN PALTHGIGHE
VGSVEVGKLA DLVLWSPAFF AVKPALVLKG GMIVTAPMGD INGSIPTPQP VHYRSMFGAL
GAARHATRMT FLPQAAMDRG LAEALNLRSL IGVVNGCRRV RKPDMVHNTL QPLIEVDAQT
YQVRADGELL VCEPASELPL AQRYFLF
|
|---|
| |