| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2612 |
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| Symbol | |
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| ID | 5190290 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 2976325 |
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| End bp | 2977818 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640587065 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001267931 |
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| Protein GI | 148547829 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.346414 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCCTGC AACCGGGCGA GCGGATCTAC AACCCGCATG AGCAGGTGTA CCTGGTGTGC
ACCGAGGGCG GCCACTACAT CCTGCAGACC CTCGATAACC TGTTCTTCTA CTTCGGCGAA
GTGCCAGACA CCAACACCGA AGTGCCGCTG CAGCGTATCG AGAACGTCCT CGGCCACTTC
CTGCACTTCA CCCGCACGCC CGACGGCACA CTGACCGACA TCAGCGCCAC CGGCGGCACC
CGCGTGCACC TGCACTACGA CAACCCGCTG GGCCGCCTGA CCGACATCAA GCGCGTGGTG
AACAACGAAG CGGTGGAAAC GCTTACCCAG TACCGCTACG ACGAACACGG CCAGCTGAGC
ACGGTGATCA ACCGCAACGG CGACACCGTG CGCAGCTTCA GCTACGCCGA CGGCCTGATG
GTGACCCACA GCAACGCGCT GGGGCTGGGC TGCCACTACC GTTGGCAAAC CCTGGGCGAC
AAGCCACGTG TGGTCGAGCA CTGGACCAGC GACGGCGAGC ACTACCACTT CCGCTACGAC
CTCGATAGCC GCACCAGCTG GGCCACCGAC GTGCTCGGCC GCGAGCTGGA AGTACGGTAC
AACGCCGACC ACCGCGTGGT CGCCAGCCGC GACTATGGCG GCGAGCGTTA CGCCATCGAG
CTGGACGAAC ACGGCAATAT GGTTGGCCTG ACCTTGCCGG ACGGTAACCG CCTGCAATTC
AAGTACGACG AATTCTCCCG CTTGCTAGAA GAGACCGACC CGCTGGGCCG CAAGACCACC
TACGAATATC ACCACCTGAC CACGCTGGTG ACCCAGGTCA GCTACCCGGA TGGCAGCACC
TGGCGAGCGC GTTACGACGA CAAGGGCAAC CTGCTCGCCG AATTCGATGC CCTCGGCCAG
ATGACCGAGT ACCTGAACAG CGATGACGGT CTGCCGCACA GAATCATCGA TGCGACCTAC
AAGTCCAAGT ACCTGTGGTG GAACACCCTG GCCCAGGTCG AGCGCTACCA GGACTGCTCG
GGCAAGAGTA CGTACTACCG CTATGACGAA CGCCAGCACC TGGTCGCAGT AACGGACGCG
CTAAACCAGA CCACCACGCT GGCGCGCAAG CCCGACGGCG AAGTGCTGCG CATCAGCCAC
CCGGACGGCA CGACGGAAAG CTTCACCTAC AACGTCTACG GTCAGGTGCT CAGCCACACC
AACGGCAAGG GCCAGACCAC CCGCCTGATG CGCACGGCCC GCGGCCTGCC GAGCAGCCGC
CAGGATGCCA AGGGCCAGCG AGTTCGTTAC GAGTATGACA AAGCGCAGCG CCTGACCGCA
CTATTCAACG AAAACAACGC CACGTACAGC TTTGCCTACG ACTCCAGCTC CACACCCATT
CCGCTTCTCC CCCCCGACTG GTTCCGCTGG GCGGAACCAC ATTCGTTTGT GATCCCGCGT
CACTCGCGCT TATCTGTGAG CCAAGCACGA CCTGCCTCAC CTGTCGTGAC CTGA
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| Protein sequence | MTLQPGERIY NPHEQVYLVC TEGGHYILQT LDNLFFYFGE VPDTNTEVPL QRIENVLGHF
LHFTRTPDGT LTDISATGGT RVHLHYDNPL GRLTDIKRVV NNEAVETLTQ YRYDEHGQLS
TVINRNGDTV RSFSYADGLM VTHSNALGLG CHYRWQTLGD KPRVVEHWTS DGEHYHFRYD
LDSRTSWATD VLGRELEVRY NADHRVVASR DYGGERYAIE LDEHGNMVGL TLPDGNRLQF
KYDEFSRLLE ETDPLGRKTT YEYHHLTTLV TQVSYPDGST WRARYDDKGN LLAEFDALGQ
MTEYLNSDDG LPHRIIDATY KSKYLWWNTL AQVERYQDCS GKSTYYRYDE RQHLVAVTDA
LNQTTTLARK PDGEVLRISH PDGTTESFTY NVYGQVLSHT NGKGQTTRLM RTARGLPSSR
QDAKGQRVRY EYDKAQRLTA LFNENNATYS FAYDSSSTPI PLLPPDWFRW AEPHSFVIPR
HSRLSVSQAR PASPVVT
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