Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_2234 |
Symbol | |
ID | 5191968 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 2543998 |
End bp | 2544897 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640586691 |
Product | hydroxymethylglutaryl-CoA lyase |
Protein accession | YP_001267557 |
Protein GI | 148547455 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCTTGC CCAAACACGT CCGCCTGGTT GAAGTCGGCC CACGCGACGG CCTACAGAAC GAAGCCCAAC CCATCAGCGT CGCCGACAAG GTACGCCTGG TCAACGACCT CACCGAAGCG GGCCTGGCCT ATATAGAAGT GGGCAGTTTC GTGTCCCCCA AGTGGGTGCC ACAGATGGCC GGCTCTGCCG AGGTATTCGC CGGCATCCAG CAGCGCCCCG GTGTGACGTA TGCCGCACTG GCGCCGAACC TGCGCGGTTT CGAGGACGCC CTGGCTGCCG GGGTCAAGGA AGTAGCGGTG TTCGCTGCCG CCTCCGAAGC GTTCTCGCAA CGCAACATCA ATTGTTCGAT CAGCGAAAGC CTCAAGCGCT TCGAACCCAT CATGGACGCT GCGCGCAGCC ACGGCGTGCG CGTGCGCGGG TATGTGTCAT GTGTGCTTGG CTGCCCTTAC GAGGGCAAGG TCAGCGCCGA GCAGGTGGCC CCGGTGGCCC GCGCCCTGCA CGACATGGGC TGCTACGAGG TCTCGCTGGG TGACACCATT GGCACCGGCA CCGCAGGCGA CACCCGACGC CTGTTCGAGG TGGTGTCGGC CCAGGTACCG CGCGAGCAGT TGGCCGGACA CTTCCATGAC ACTTACGGCC AGGCCTTGGC CAACGTCTAT GCCAGCCTGC TCGAGGGCAT CAGCGTATTC GACAGCTCGG TAGCCGGGCT GGGCGGCTGC CCTTACGCCA AGGGTGCTAC CGGCAATATC GCCAGTGAAG ACGTTGTGTA CCTGCTGCAG GGGCTTGGCA TTGAAACCGG CATCGACCTG GGCCGGCTGA TAGCCGCCGG CCAGCGCATC AGCGGCGTGC TGGGCCGCGA CAACGGGTCG CGGGTAGCAC GGGCGTGCAG CGCACAATAG
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Protein sequence | MSLPKHVRLV EVGPRDGLQN EAQPISVADK VRLVNDLTEA GLAYIEVGSF VSPKWVPQMA GSAEVFAGIQ QRPGVTYAAL APNLRGFEDA LAAGVKEVAV FAAASEAFSQ RNINCSISES LKRFEPIMDA ARSHGVRVRG YVSCVLGCPY EGKVSAEQVA PVARALHDMG CYEVSLGDTI GTGTAGDTRR LFEVVSAQVP REQLAGHFHD TYGQALANVY ASLLEGISVF DSSVAGLGGC PYAKGATGNI ASEDVVYLLQ GLGIETGIDL GRLIAAGQRI SGVLGRDNGS RVARACSAQ
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