| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2179 |
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| Symbol | |
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| ID | 5190658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 2472140 |
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| End bp | 2472892 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640586636 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001267502 |
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| Protein GI | 148547400 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.158318 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAGT CCATGGCCTT GCTGGGTGCG TGCGCCCTGC TGCTGGCGGG TGCCGCCAGC
GCTGAAACCC TGCGGTTCGC CACCGAGGGT GCCTACCCGC CCTTCAACTA TGTAGACGCC
GATAACAAGC TGCACGGCTT CGATGTCGAC ATCACCCATG CCCTGTGCGA ACAGATGAAA
GTCGAATGCA CGCTGGTGGC GCAGGACTGG GAAGGCATCA TCCCCGCCCT GATGGCGCGC
AAGTATGACG CGGTGGTGGC ATCGATGATC GACACCGAAG AGCGACGCAA GAAGATCGCC
TTCACCGACC ACTACTACCG CACGCCCCTG ACCGTGGCGG TTGCCAAGGA CAGCAAGATC
GACAGCGCCC AGACCGACTT TGTCGGCTAC ACCGTCGGTG CGCAATCTTC CTCTACCCAG
GCCATCTACG CCGAAGACGT GTACGGCAAG GCCGGTGCCG ACGTGAAACT GTACCCGACC
ATGGACGAAG CCAACGCAGA CCTGGCGGCC GGCCGCCTGG ACGGCGTGAT TGCCGACAAA
TTCCCGCTGC ACGAGTGGAT GAACAAGAAC GGCGGGGATT GCTGCAAGAT CCTTGGCGAC
GTGGCCGACA CCAAGGCCGA TGCCGCGATC GCTGTGCGCA AGGACGACGA AGCCCTGCGC
CAGCGCCTGA ATACCGCGCT GCAACAGATC GTGGCCAACG GCACCTACCA GAAGATCGCC
AGCAAGTACT TTGCTTTCGA TATCTACAAC TGA
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| Protein sequence | MNKSMALLGA CALLLAGAAS AETLRFATEG AYPPFNYVDA DNKLHGFDVD ITHALCEQMK
VECTLVAQDW EGIIPALMAR KYDAVVASMI DTEERRKKIA FTDHYYRTPL TVAVAKDSKI
DSAQTDFVGY TVGAQSSSTQ AIYAEDVYGK AGADVKLYPT MDEANADLAA GRLDGVIADK
FPLHEWMNKN GGDCCKILGD VADTKADAAI AVRKDDEALR QRLNTALQQI VANGTYQKIA
SKYFAFDIYN
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