| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1786 |
|---|
| Symbol | |
|---|
| ID | 5191088 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 2045921 |
|---|
| End bp | 2046997 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640586254 |
|---|
| Product | outer membrane autotransporter |
|---|
| Protein accession | YP_001267123 |
|---|
| Protein GI | 148547021 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
|---|
| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.682029 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.590012 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGCA CCTCGAACCC CTTGCGCTTC GACAGCATTT TCTACGCGGT TTCCACGTCG
CTGCTTCTGG CAACCCCGGT GGAAACGATC GCGTACGAAC TGCAGGGTGA CCCCACCTCC
CCCGGCTTTC TGCAGCAACC TTTAGCGGCG CAACTGTCGC TCGACCCGCT CAGTGCCAGC
GGGTTGAGTC TCGGCACCCT CAATGCGTTT TCGCAGCAAA TGAGCGAACG CCACCGGCAG
GCGCCACCCG ACCTGATTGC CAGTCAATGG GCGCAGTTCT TCCCCACCAG TGCGCGCGGC
CGCGCGCTGC CCCCGGCACA GCTGGAAGCG CCCAGCCAGC AACTGATGAT CGGCCCGGAC
CTGTTCGTGC GTGAAACTGC AGCGGGCGAT GTGCACCGCG CAGGGATTTT CGTGGGGCAC
AACAACCTGC AAAGCAGCTT CAAAGGCATG CGCCCTCTGC TGGGCGACAA GCAGCGCAAA
GCGGTGAACT TGAGCGGAGA AAGCCTGGGG GTGTACTGGA GCATGACCCA TGAACAGGGT
TGGCACCTGG ATGCCGTGGC CATGGGCTCG CGGATCGACG TGATGGGCCG TGGCGAAAAC
GGCCAGCGCC TGGACGACAG TGGCCATGCA ATGACCTTCT CGGTAGAGGG CGGTTACCCG
ATCCGCCTGG GTGGCAACTG GGTCATCGAA CCCCAGGCAC AGTTGATCAA CCAGCAGTTC
TTCCCTGGCA ACCAGGTGCA GGAGGAGACC TTGCAAGCCT TCGACAGCCA GCCGAGCTGG
AGCGGCCGGG TCGGTGCCAA GTTGTCCGGG CGCTACGAAG TGCGCGGCAT GCCCATCGAA
CCCTATGTGC GGACCAACGT GTGGTATGAC TTCAGCAATG CCGATGAGGT GAAGCTGGAC
CAGGTCGACA AGATTTCCAG CTCGCGCTAC TCGACTACCG TGGAGTTAGG GTTGGGGTTG
GTGGCGCGGG TGACGCCTTC GGTGGCCATG TTCGTCAGCG CCGATTACAG CAGTGATGTG
GATGACAATG ACCTGAACGG GCTGATCGGC AGCCTTGGGG TGCGGATGCG GTGGTAG
|
|---|
| Protein sequence | MKSTSNPLRF DSIFYAVSTS LLLATPVETI AYELQGDPTS PGFLQQPLAA QLSLDPLSAS
GLSLGTLNAF SQQMSERHRQ APPDLIASQW AQFFPTSARG RALPPAQLEA PSQQLMIGPD
LFVRETAAGD VHRAGIFVGH NNLQSSFKGM RPLLGDKQRK AVNLSGESLG VYWSMTHEQG
WHLDAVAMGS RIDVMGRGEN GQRLDDSGHA MTFSVEGGYP IRLGGNWVIE PQAQLINQQF
FPGNQVQEET LQAFDSQPSW SGRVGAKLSG RYEVRGMPIE PYVRTNVWYD FSNADEVKLD
QVDKISSSRY STTVELGLGL VARVTPSVAM FVSADYSSDV DDNDLNGLIG SLGVRMRW
|
|---|
| |