| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1592 |
|---|
| Symbol | |
|---|
| ID | 5194028 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 1779317 |
|---|
| End bp | 1782805 |
|---|
| Gene Length | 3489 bp |
|---|
| Protein Length | 1162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640586061 |
|---|
| Product | chromosome segregation protein SMC |
|---|
| Protein accession | YP_001266932 |
|---|
| Protein GI | 148546830 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
|---|
| COG ID | [COG1196] Chromosome segregation ATPases |
|---|
| TIGRFAM ID | [TIGR02168] chromosome segregation protein SMC, common bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.843365 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.195769 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTGA AGTGCATTCG CCTGGCCGGG TTCAAGTCGT TCGTCGACCC GACCACGGTC
AACTTCCCCA GCAACATGGC GGCCGTGGTC GGCCCAAACG GCTGCGGCAA GTCCAATATC
ATCGACGCGG TGCGTTGGGT GATGGGCGAA AGTTCGGCGA AAAACCTGCG CGGCGAGTCG
ATGACCGACG TCATCTTCAA CGGCTCCAGT GGCCGCAAGC CGGTCAGCCA GGCCAGTATC
GAACTGGTGT TCGACAACAG CGAAACCACC CTGGTCGGCG AGTATGCCGC CTACGCCGAG
ATTTCGATCC GCCGCAAGGT TACCCGCGAC GGGCAGAACA GCTATTACCT CAACGGCACC
AAGTGCCGCC GGCGTGACAT CACGGATATT TTCCTCGGGA CGGGTCTGGG GCCGCGCAGC
TACTCGATCA TCGAGCAGGG CATGATCTCC AAGCTGATCG AGGCCAAGCC CGAGGAGCTG
CGCAACTTCA TCGAGGAAGC GGCGGGCATT TCCAAATACA AGGAGCGCCG CCGCGAAACC
GAGAACCGCA TCCGTCGCAC CCAGGAAAAC CTGGCGCGCC TGACCGACCT GCGCGAAGAG
CTCGAGCGCC AGCTGGAGCG TCTGCATCGC CAGGCCCAGG CCGCCGAGAA GTACCGTGAG
TACAAGGCTC AGGAGCGCCA GATGAAAGCG CGCCTGTCTG CCTTGCGCTG GCGAGACCTG
GACGAACAAG TACGCCAGCG CGAATCGGTG ATCGGCGATC AGGGCGTTTC TCACGAGGCA
CTGGTGGCCG AGCAGCGCAA TGCCGATGCC AGTATCGAAC GCCTGCGCGA CGGTCATCAC
GAACTGTCCG AACGCTTCAA CCAGGTGCAG GGCCGTTTCT ATTCGGTGGC CGGTGACATC
GCCCGGGTCG AGCAGAGCAT TCAGCATGGC CAGCAGCGCC TGCGGCAGTT GCAGGACGAC
TTCAAGGAAG CCGAGCGCAC ACGCCTGGAA ACCGAATCGC ACCTGGGGCA CGACCGTACC
TTGCTGGCAA CCCTGAGCGA AGAGCTGGTC ATGCTCGAAC CCGAGCAGGA AATGACCCTG
GCGGCTGCCG AGGAAGCGGC TGCCGCGCTT GAAGAGGCCG AGCTGGGCAT GCACGGCTGG
CAGGAACAGT GGGACAGCTT CAACAGCCGC TCCGCCGAAC CGCGCCGCCA GGCCGAAGTG
CAGCAGGCGC GCCTGCAGCA GCTGGAAACC AGCCTTGAGC GCCAGGCCGA GCGCCAGCGC
AAGTTGGTCG AGGAGCGCGA GCAACTGGGC GGCGACCCGC AGGATGCCGC CATGCTCGAA
CTGGCCGAGC AACTGGCCAG CAGCGAAATG CTGCTGGAGG AACTGCAGCT CTGCGAAGAG
CAGGTGATCG AGCGCCTGGA AAGCGCGCGC GAGCAAATGC AGCAGGCCAC CCAGGCGCAA
CAGCAGGCAC AGGGTGACCT GCAGCGTCTG GGCGGGCGTC TGGCCTCGCT TGAAGCCTTG
CAGCAGGCCG CCCTGGAGCC GGGCGCAGGT GCTGCGCAAT GGCTGCACGG CCAAGGGCTG
GAGCAACAGC CGCGGCTGGC CGAAGGCTTG CGGGTGGAGC CGGGTTGGGA GCTGGCGGTA
GAGACGGTGC TTGGCGCCGA TCTGCAGGCT GTGCTGGTGG ACGATTTCAA CGACCTCGAT
TTTGCGGGCC TGGAACAGGG TGAGCTGCGT TTGCTGCTGG CCGTCGGCGC GGGGGCGACG
TTGCCCGGCA GCTTGCTGGA GAAGGTTGAG GGCCGTATCG ACCTGGCGCC CTGGCTGGGC
CAGGTCAGGC CTGTGGAAGA CCTGGCTCAG GCACTGGAGC AGCGCGCGTC GCTCGGCGAA
GGGCAGAGCC TGGTCAGTCG TGATGGCTAC TGGGTCGGCC GGCACTTCGT GCGGGTACGC
CGAGGTGGCG AGGCCGAAGG CGGCGTGCTG GCGCGCGGCC AGGAAATCGA ACGCCTGGGC
CAGGAACAAC TGGAGCAGGA AGCGGCGCTG GAGCAACTCG ATCAACAGTT GCAGGCGCTG
CGCGAGCAGC AACTGGACCT GGAGGAGCAG CGCGAACAGT TGCGCCGCCG CACACAGGAT
GAAAACCGCC TGCACGGCGA GCTGAAGGCC AGTCTTTCGG CCAGCCGCGC GCGCGCCGAG
CAGGTCGAGT TGCGCCGCCG CCGCTTGCAC GAAGAGCTGA GCGAGCTGGA AGAGCAGCGC
GCCCTGGAAC ACGAGCAACT GGGCGAAGCA CGCCTGCTGC TGCAAGAGGC TCTGGAGCTC
ATGGCCCAGG ACACCGAGCA GCGCGAACAG TTGATGGCCC GCCGCGACAC CCTGCGCGAA
AGCCTTGACC GGGTGCGTCA GGAGGCCCGC CAGCACAAGG ACCACGCTCA CCAGCTGGCG
GTGCGTCTGG GGTCGTTGCG TGCCCAGCAC GACTCTACCC GCCAGGCGCT GGAGCGCCTG
GAACTGCAAG CTGCGCGCCT GACCGAGCGC CAGGAACAAC TGAGCCTGAA CCTGGAGGAG
GGTGAAGCCC CGCAGGAAGA ACTGCGCCTG AAGCTGGAGG AGCTGCTGGA GCGGCGCATG
AGCGTCGACG AGGAAATGCG CCTGGCTCGC CTGCACATGG ACGAAGCTGA CCGCGAACTG
CGCGATGCCG AAAAACGCCG TACCCAGGCC GAGCAGCAGG CCCAGCTGCT GCGTGGTCAA
CTGGAGCAGC TGCGCCTGGA GTGCCAGGGC CTGGATGTGC GGCGCAAGAC CCTGCAAGAG
CAGTTGCTGG CCGACGGCTA TGACCTGCAA GGCGTGCTCG CCACCCTGGA AGCCGAGGCC
AGCGAGCAGG GCACCGAGCA GGAGCTGGAA CAGCTTGAAG CGCGCATCCA GCGCCTGGGG
GCGATCAACC TGGCGGCCAT CGAAGAATAC GAGCAGCAGT CCGAGCGCAA ACGATACCTG
GACGCTCAGG ACGCCGACCT GGTCGAAGCG CTGGAGACCC TCGAAAACGT CATCCGCAAA
ATCGACAAGG AAACCCGCAA CCGCTTCAAG GATACCTTTG ATCAGATAAA TGCCGGATTA
CAGGCACTTT TCCCAAAAGT TTTCGGTGGT GGCAGCGCTT ATCTGGAACT GACGGGCGAA
GATCTACTCG ATACAGGGGT AACGATCATG GCGCGACCGC CGGGCAAGAA GAACAGCACC
ATCCATCTGC TGTCCGGTGG CGAGAAGGCA CTGACCGCTT TGGCGCTGGT GTTTGCCATC
TTCAAGTTGA ACCCCGCACC GTTCTGCATG CTCGACGAGG TCGATGCACC GCTGGACGAT
GCCAACGTCG GGCGCTACGC GCGTCTGGTC AAGGAAATGA GTGAAAGCGT GCAGTTCATC
TACATCACCC ATAACAAGAT TGCCATGGAG ATGGCGGACC AATTGATGGG GGTGACCATG
CATGAGCCGG GTTGTTCACG CCTTGTTGCA GTTGATGTGG AGGCGGCCAT GGCCATGGTC
GACGCTTGA
|
|---|
| Protein sequence | MRLKCIRLAG FKSFVDPTTV NFPSNMAAVV GPNGCGKSNI IDAVRWVMGE SSAKNLRGES
MTDVIFNGSS GRKPVSQASI ELVFDNSETT LVGEYAAYAE ISIRRKVTRD GQNSYYLNGT
KCRRRDITDI FLGTGLGPRS YSIIEQGMIS KLIEAKPEEL RNFIEEAAGI SKYKERRRET
ENRIRRTQEN LARLTDLREE LERQLERLHR QAQAAEKYRE YKAQERQMKA RLSALRWRDL
DEQVRQRESV IGDQGVSHEA LVAEQRNADA SIERLRDGHH ELSERFNQVQ GRFYSVAGDI
ARVEQSIQHG QQRLRQLQDD FKEAERTRLE TESHLGHDRT LLATLSEELV MLEPEQEMTL
AAAEEAAAAL EEAELGMHGW QEQWDSFNSR SAEPRRQAEV QQARLQQLET SLERQAERQR
KLVEEREQLG GDPQDAAMLE LAEQLASSEM LLEELQLCEE QVIERLESAR EQMQQATQAQ
QQAQGDLQRL GGRLASLEAL QQAALEPGAG AAQWLHGQGL EQQPRLAEGL RVEPGWELAV
ETVLGADLQA VLVDDFNDLD FAGLEQGELR LLLAVGAGAT LPGSLLEKVE GRIDLAPWLG
QVRPVEDLAQ ALEQRASLGE GQSLVSRDGY WVGRHFVRVR RGGEAEGGVL ARGQEIERLG
QEQLEQEAAL EQLDQQLQAL REQQLDLEEQ REQLRRRTQD ENRLHGELKA SLSASRARAE
QVELRRRRLH EELSELEEQR ALEHEQLGEA RLLLQEALEL MAQDTEQREQ LMARRDTLRE
SLDRVRQEAR QHKDHAHQLA VRLGSLRAQH DSTRQALERL ELQAARLTER QEQLSLNLEE
GEAPQEELRL KLEELLERRM SVDEEMRLAR LHMDEADREL RDAEKRRTQA EQQAQLLRGQ
LEQLRLECQG LDVRRKTLQE QLLADGYDLQ GVLATLEAEA SEQGTEQELE QLEARIQRLG
AINLAAIEEY EQQSERKRYL DAQDADLVEA LETLENVIRK IDKETRNRFK DTFDQINAGL
QALFPKVFGG GSAYLELTGE DLLDTGVTIM ARPPGKKNST IHLLSGGEKA LTALALVFAI
FKLNPAPFCM LDEVDAPLDD ANVGRYARLV KEMSESVQFI YITHNKIAME MADQLMGVTM
HEPGCSRLVA VDVEAAMAMV DA
|
|---|
| |