| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1516 |
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| Symbol | |
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| ID | 5190517 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 1699466 |
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| End bp | 1700380 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640585986 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_001266857 |
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| Protein GI | 148546755 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.209922 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGAAA ATATTGCAAT TATAACGGGT GGAAACTCCT CGGAGCGGGA GGTTTCCCTT
CAAACTTCCG AAGCTGTCTC ACAATCGTTG AAAACCCTCC AAATCAGCCA TGAGATTTTC
ACCATTTCGG ACTATAGAGA ACTGCTTAGT CTGGACCTCG CTAAATTCAC CAGAGTCTTT
TTGGCGCTTC ATGGCGGTTT CGGTGAAAAC GGGATGGCAC AAGCATATTT AGAAGGACTA
GGGATCCCAT ATAATGGCCC TTCTCCTCAG GCCAGCGCAA TCTGCATGGA CAAGCTTCTA
ACGAAGCATA TTGCAAGAGG ACTTGGAATA AATGTCGCAA ACTATCTTTA CTCGAAAAAC
GGTGATGACG TTTGTTTTGA AGAAATCAGT GAACGCCTAG GAACACCCTG CATCGTCAAA
CCTAACCGTG AAGGATGTAG CTTCGGTGTG TCTCTGGTCC GCGACCTCAA AGCTGACCTC
CAGCCTGCTA TAAACGCAGC AGCAAAATTT CACACTGGAA TTCTAATAGA AGAATTTATA
AGTGGGCCCG AGTTATCCGT ATGCTATTTA AACAAATCCA CGCTACCCAT CTATACAGTT
GAATTTGAGA GTGATTTCTT CTCTTATGAT GCGAAATTCA TATCCACCAA GACGAATGCC
ACCCTCTCCA TCCTAGACAG GAGCACCCAT CAACTAGTCA CCAACTACTG CTCTGCTATC
GCTGAGGCAC TTGAGCTTGA TTACTTTAGA GCAGACTTCA TCGTCCACAA CACAGAGCCG
TACCTTATTG AGCTTAACAC CCTTCCCGGG CTTACAAGCC ATAGTCTTTT TCCGAAAGCA
TGCCAGCAAC ATGGTATCGA ATTTGACAAA CTGGTACTTA TCTTAAACAA CTTGGATCCT
AGCCAATACT GCTGA
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| Protein sequence | MIENIAIITG GNSSEREVSL QTSEAVSQSL KTLQISHEIF TISDYRELLS LDLAKFTRVF
LALHGGFGEN GMAQAYLEGL GIPYNGPSPQ ASAICMDKLL TKHIARGLGI NVANYLYSKN
GDDVCFEEIS ERLGTPCIVK PNREGCSFGV SLVRDLKADL QPAINAAAKF HTGILIEEFI
SGPELSVCYL NKSTLPIYTV EFESDFFSYD AKFISTKTNA TLSILDRSTH QLVTNYCSAI
AEALELDYFR ADFIVHNTEP YLIELNTLPG LTSHSLFPKA CQQHGIEFDK LVLILNNLDP
SQYC
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