| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1220 |
|---|
| Symbol | |
|---|
| ID | 5192130 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 1383484 |
|---|
| End bp | 1384176 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640585683 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001266565 |
|---|
| Protein GI | 148546463 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1720] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00104] probable methyltransferase, YaeB/AF_0241 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.420343 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCATA CGGTTGTCCC GGTCGGCATC GTCCACTCCT GTTTCAAGGA AAAGTTCGCC
ATTCCGCGCC AGCCACAGCT GGCGCCTGCC GCCCGTGGCG TGCTCGAACT GTTGCCGCCG
TTCGATCAAG GTGACGCGGT CGAAGGCCTG GAGCAGGTCA GCCATGTCTG GCTGCTGTTC
CTGTTCCACC AGGCCCTGGA AGAAAAGCCG CGCCTGAAAG TGCGGCCTCC GCGTCTGGGC
GGCAACAAGA GCATGGGGGT GTTCGCCACC CGCGCCACCC ACCGGCCCAA CGGCATCGGC
CAGTCGGTGG TACGCCTGGA GGGCGTGGAG CCCGGGCGCC TGCTGCTGTC CGGGATCGAC
CTGCTCGACG GCACGCCGGT GCTGGACATC AAGCCGTATG TGCCCTATGC CGACAGCGTC
GCTGGCGCCA GCAACCAGAT GGCCAATGCA GCGCCTGTGG CAATTGCCGT GCAGTGGGCG
GACAACGCCC TGATCCAGGC CCGCGAGCAT GCGCTGCGTT TGAATGAGCC GCTGGTGCAA
CTGATCGAGC AATGCCTGGC GCAGGACCCA CGGCCGGCCT ACCAGATACC ACCGTCCGAG
CGGGTGTACG GGGTGAAGTT CTGGGATGTG CAAGTAAGGT GGCATTACCC ACAGCCGGAC
GTCATCCGGG TGATGGAGGT GGTACTGGGC TGA
|
|---|
| Protein sequence | MQHTVVPVGI VHSCFKEKFA IPRQPQLAPA ARGVLELLPP FDQGDAVEGL EQVSHVWLLF
LFHQALEEKP RLKVRPPRLG GNKSMGVFAT RATHRPNGIG QSVVRLEGVE PGRLLLSGID
LLDGTPVLDI KPYVPYADSV AGASNQMANA APVAIAVQWA DNALIQAREH ALRLNEPLVQ
LIEQCLAQDP RPAYQIPPSE RVYGVKFWDV QVRWHYPQPD VIRVMEVVLG
|
|---|
| |