| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1189 |
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| Symbol | |
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| ID | 5195166 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 1340104 |
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| End bp | 1341177 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640585647 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001266534 |
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| Protein GI | 148546432 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0106637 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.54324 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACAATC GCATCGGCAA AGGACTTTCA TTCGTCAAGC GCATCTACCT GCCGCGGGTC
ATTGGCCTGG GAATCGGCCT GTTCACTGTC ATGGCGGCGA TTGCGCCGCT GTCGCCCCCC
TCCTGGACAT GGCTGCTAGT ACTGTTCAAT GGCTTGCTGT GGCCGCACGT GGCCTACCAG
TGGGCTGCCC ACTCGACAAC GCCTTACCAG GCGGAACAGC GCAACCTTCT GCTGGACTCG
CTGATGGGCG GGTTCTGGAC TGCCGCCATG CACTTCAACC CGCTACCCAG CGTGACCGTG
CTGTCGATGA TGACGATGAA CAACGTCGCC GCCGGCGGCA AGCGCATGGT CTTTCGCGGA
GCGCTGGCGC AACTGGCTGG CATGCTCGCC GCCATCCTGC TGCTTGGCCC TGGCTTGCAA
TTGATCGCCA CGCCCCTGCA GGTCTATGCG TGCCTGCCAA TGCTGGCGCT GTACCCACTG
GCCTTGGGCT GGGTGTGCTA CCAGCTTGCG ATCAAGCTGG GCGACCACAA GCGCCGGCTG
AGCGCCCTGA GCCTCACCGA CAGCCTGACC GGGCTGTTCA ACCACGGCGC CTGGAAGGAC
CTGCTGCAGC TCAAGTTCCA GGCGTGCAGG CAGCGACAGG GGCACGCGGT GATTGCCCTG
ATCGACATCG ATCACTTCAA GACCATCAAC GACACCTTTG GCCATGTGGT CGGCGACTGT
GTACTGCGCC AGCTCAGCGC TGAGCTGCGG CGCAGTTTGC GCGAGGGCGA CCAGGCCGGG
CGTTACGGCG GCGACGAATT CTGCGTGATC CTGCCCGAAA TCAGCGAAGC CCAGGCCTGC
CAAGTCATGG AGCGTCTGCG CGAGCGGGTT TCCAGCTACC GCAACACACA GTTACCGCAC
CTGCGCATCA GCCTGAGTAT CGGCCTGTCA CCCTTCGAGG CCAACCTCGA GTCCCCCGAG
CACTGGCTCG AACAGGCGGA CAAGGCGCTG TACATCGCCA AGCACGCTGG CCGCGATCAG
GTCAATTTTG CCCGCGGTGA AGCTGCCGCG CTCAGGCTGG CCTATCCTGA TTGA
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| Protein sequence | MDNRIGKGLS FVKRIYLPRV IGLGIGLFTV MAAIAPLSPP SWTWLLVLFN GLLWPHVAYQ
WAAHSTTPYQ AEQRNLLLDS LMGGFWTAAM HFNPLPSVTV LSMMTMNNVA AGGKRMVFRG
ALAQLAGMLA AILLLGPGLQ LIATPLQVYA CLPMLALYPL ALGWVCYQLA IKLGDHKRRL
SALSLTDSLT GLFNHGAWKD LLQLKFQACR QRQGHAVIAL IDIDHFKTIN DTFGHVVGDC
VLRQLSAELR RSLREGDQAG RYGGDEFCVI LPEISEAQAC QVMERLRERV SSYRNTQLPH
LRISLSIGLS PFEANLESPE HWLEQADKAL YIAKHAGRDQ VNFARGEAAA LRLAYPD
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