| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1188 |
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| Symbol | |
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| ID | 5195165 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 1337467 |
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| End bp | 1340052 |
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| Gene Length | 2586 bp |
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| Protein Length | 861 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640585646 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001266533 |
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| Protein GI | 148546431 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.179434 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAGGA CCGCCAAGCT TCTACCCGCT AGCCCCACAC CGCGCTTTCA GGTGCGCCAC
CTCATTGCCG GTTTCAGCGC AGTGTTCGGC CTGGCTTGCC TGGTCATTCT CGGCGCTCTG
TTCAATATCG CCAGCACACT CGACCAACAG GAGCGCCAGC GTAGCGCCTT CCATGCGAAC
CAGGCGCTGG AACAACGGCT GCTCGCCTCG CGCCAGTTTC TGTCCAGCTA TGCCGTATGG
GATGCAGCCT TCGAGCACTT GTCGGGCCAA GCCGACTGGC AATGGGCCTA CGAGGAAAAA
AACATAGGTG AGTCGCTGTA CAGCGCCAGC GGCTACGAAG GGGTGTTCGT AGTGGAAAAC
GACCGCACCA CCTATGCCTT GTTCAAAGGC CAGCCCAGCC AGGCAGGTGC CAACACCTAC
ATAGACACAC CGCTGCAGCC GATCATCGAA CAAGCCCGCG CGGCGGCAGT TTCACGCGAG
CAAATCACCC ATTTCGTGCT GTTCAATGGC TGGCCGGCCG CACTCAGTGC AGCAGCCGTG
CGCCCGGACC GGGAGGTTAC CGACAGCGAG GTGAGCCAGG CGCCGGTGAT GCTGTTCATT
GACCAGCTCA CCGAAAGCAA ACTGGCGCAG TTGGGCAACG GCGCCGGCCT GACGGGCATG
CACGTGGAAA AGGAGGATAT GCAGGATCAC AGCCACCTGC GCATCGACCT GGGCGACACC
GGCTACCATC TGACCTGGAA CAGCCCACTG CCGGGGCGTC AGATGCTGCG GGCAGTGTTG
CCAGCACTGT TGTGCGCACT ACTGATACTT GGCTTGGTGA TGCTGTACCT GTTCCGCCAT
GCCTTGCGCA GCTCCCGGGC AATCGGCCTC ACGCTCGTGC ATCTGCAACA AAGCAACCAG
GCCCTGGAGG CCAGCGAGCA GCGTTTCCGC GCGGTGGCCG AATCGGCATC CGACTGGATC
TGGGAAACCG ACCGGCATCA ACGCCTGACC TACCTGTCGC AACGCTTCGC CAACGTCACC
GGCTACCCGG TAGACGGCTG GCTGGGCCAC CCGCTCAACC AGTTGCTGGC CTGCGACACC
ACGCCGTTGT CACCTTGGCT CGACGCCCTG GCTACCGCCG ACCCGCAGCA ATTGGCCAAC
CTGCGTTGCA CTTACCGCGA CCAGAATGGC CAGAACCGCT ACTGCCGGAT ATCCGCCCGC
GCTATCTGGC GCGATGGCAA GGCCATCGGT TTTCGGGGTA CCGCCAGCGA TATCACCGAC
GAAGTCGACG CCCACGCGCG CATCCAGCAT CTTTCGCTGC ACGACCCACT GACCGGGCTG
GCCAACCGCA ATAAGCTCGC CCGGCACTTG GAGCAAGCCT TGTTGCGCGG CAGTGACTCG
CCGCCGCTGA CCTTGTTGCT GCTGGACCTG GACAACTTCA AGCCGATCAA CGACTCGCTC
GGTCATGCCG CCGGAGATGC CGTGCTGCAA GAAGTGGCAA CGCGCCTGCG TGACACCACC
CGCGATGGCG ACCTGGTCGC GCGTCTGGGC GGCGACGAGT TCATCCTGGT ACTCAGCGGC
ATGGACAACA GCAGCGAGAT CGACCGCTTC TGTGCGCGCC TGATCGGCCT GCTGCAGCAA
CCCATCGTCT TCGAAAGCCA GCCGCTGCAC ATCGGTGCCA GCATTGGCGT TGCCCAGACG
CGTAACCAGG GCTTCGATGC AGGTGAGCTG ATCCGCTGCG CCGACATCGC CCTGTACCAG
GCCAAGGCCG ATGGAAAGAA CACATGGCGC TACTTCGTTG CCGAAATGAA CCAGCAGATC
CAGTACCGCC GCCAGCTGGA GAACGACCTG CGCCGGGCCC TGCGCAATGA GGAGTTCGAG
TTGCATTACC AGCCACGCTA CCGCCTCGAC GACCTGCGTA TCGTCGCGGT CGAGGCCTTG
GTGCGCTGGC GGCATCCACA GGAAGGGTTA CTGGGGCCGG ACACCTTCAT TCCGTTGGCC
GAGCAGAGCG ACATCATTGT TGCGCTGGGC CGCTGGGTGC TTCGCGAAGC TTGCCGCACT
GCCCATGACT GGCCAGCCGA CGTGCTGGTT TCGGTCAACC TGTCGCCTGC GCAATTCTTG
CGCAGCGATG TGGTAGCCGA CGTGCGCGAA ATTTTGCTCG ACACGGCCTT CCCCGCCCAG
CGGTTGGAAC TGGAGATTAC CGAGAACGTG ATGCTCAACG ACATCGAGGG CGCGCTAGGC
ACCATGCTGT CGCTCAAGGA GCTAGGGGTG CGCCTGAACA TGGATGATTT CGGCACCGGC
TATTCGTCGT TGGGCTACCT GCGTACTTAC CCGTTCGACA GCATCAAGAT CGACAAACGC
TTCATCAGCG GCCTGAACAA CAACGGCGGC AGCGACCGCG CTGTGGTCCA GGCCATCATC
AACCTGGGTG AGGCGATGGG GCTGACAGTG ACAGCCGAAG GCGTGGAAAG CGAACATCAA
CTCAAGGCGC TGGAAAACGA TCGCTGCCAT GAAGTGCAAG GCTATTACCT GAGCATGCCC
CTGGACAGCG CCGGATTGGC GGCGTTGTTG CACCAAACCT CCCAAAGCAC TGCACAGCCC
TTGTAG
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| Protein sequence | MARTAKLLPA SPTPRFQVRH LIAGFSAVFG LACLVILGAL FNIASTLDQQ ERQRSAFHAN
QALEQRLLAS RQFLSSYAVW DAAFEHLSGQ ADWQWAYEEK NIGESLYSAS GYEGVFVVEN
DRTTYALFKG QPSQAGANTY IDTPLQPIIE QARAAAVSRE QITHFVLFNG WPAALSAAAV
RPDREVTDSE VSQAPVMLFI DQLTESKLAQ LGNGAGLTGM HVEKEDMQDH SHLRIDLGDT
GYHLTWNSPL PGRQMLRAVL PALLCALLIL GLVMLYLFRH ALRSSRAIGL TLVHLQQSNQ
ALEASEQRFR AVAESASDWI WETDRHQRLT YLSQRFANVT GYPVDGWLGH PLNQLLACDT
TPLSPWLDAL ATADPQQLAN LRCTYRDQNG QNRYCRISAR AIWRDGKAIG FRGTASDITD
EVDAHARIQH LSLHDPLTGL ANRNKLARHL EQALLRGSDS PPLTLLLLDL DNFKPINDSL
GHAAGDAVLQ EVATRLRDTT RDGDLVARLG GDEFILVLSG MDNSSEIDRF CARLIGLLQQ
PIVFESQPLH IGASIGVAQT RNQGFDAGEL IRCADIALYQ AKADGKNTWR YFVAEMNQQI
QYRRQLENDL RRALRNEEFE LHYQPRYRLD DLRIVAVEAL VRWRHPQEGL LGPDTFIPLA
EQSDIIVALG RWVLREACRT AHDWPADVLV SVNLSPAQFL RSDVVADVRE ILLDTAFPAQ
RLELEITENV MLNDIEGALG TMLSLKELGV RLNMDDFGTG YSSLGYLRTY PFDSIKIDKR
FISGLNNNGG SDRAVVQAII NLGEAMGLTV TAEGVESEHQ LKALENDRCH EVQGYYLSMP
LDSAGLAALL HQTSQSTAQP L
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