Gene Pput_1020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_1020 
Symbol 
ID5194857 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp1146781 
End bp1147842 
Gene Length1062 bp 
Protein Length353 aa 
Translation table11 
GC content63% 
IMG OID640585478 
Productpermease YjgP/YjgQ family protein 
Protein accessionYP_001266365 
Protein GI148546263 
COG category[R] General function prediction only 
COG ID[COG0795] Predicted permeases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.362766 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.829125 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTAAGC TCGATCGATA CATCGGCCAG AGCGTGCTGC TGGCCATCCT GGCCGTGCTG 
GGGATCATCC TCGGCCTGGC TTCGCTTTTC GCCTTCATCG ATGAGATGGG CGACCTGAGT
GACACCTACA CGGTGCTGGA GGCAGGCAAC TTTGTCCTGC TTACTGCACC TCGGCGGCTG
TATGAAATGC TGCCAATGGC CGCCCTGATC GGTTGCCTGA TCGGCCTGGG CAGTCTGGCC
AGCAGCAGCG AGCTGACCAT CATGCGTGCG GCTGGCGTGT CCATCGGCCG TATCGTCTGG
GCGGTGATGA AGCCGATGCT GGTGCTGATG CTGGTGGGGC TGCTGATTGG CGAATATGTG
GCACCGGTGA CCGAGAACAA GGCCCAGGCC GACCGTTCCC TGGCCCAGGG TGGTGGTGAA
GCACAGAGCT CCAAACGTGG CATGTGGCAC CGCCAGGGCG AGGAGTATGT GCACATCAAC
GCCGTACAGC CCGATGGCCT GCTGCTGGGC GTGACCCGCT ACCGCTTCGA CAGCGAGCGC
AAGATTGTCA CCTCGAGCTT TGCCCGCCGT GCGCAGTACC AGAACGACCA CTGGCTGCTC
GCCGATGTGC GTACCACCTA CTTCCGTGGC GACCACACCG AGGTGGTCAA CGCGCCGGAG
GAGCGCTGGG ATGTTTCGCT CACGCCAGAA CTGCTCAATA CCGTGATCCT CGCGCCGGAG
TCGCTTTCGA TTACCGGGTT GTGGGATTAC ATCCACTACT TGTCTGATCA GGGCCTGAAC
AACTCCCGCT ACTGGCTGGC GTTCTGGACC AAGGTGCTGC AGCCGATGGT AACGGCGGCC
CTGGTGCTGA TGGCGATCTC GTTCATCTTT GGCCCGCTGC GTTCGGTTAC CCTTGGTCAG
CGCGTGTTCA CGGGTGTGCT GGTGGGCTTC GTGTTTCGCA TTGGCCAGGA CCTGCTCGGG
CCTTCGAGCC AGGTATTCGG CTTCCCGCCG CTGCTGGCGG TGGTGATACC GGCGGGCATC
TGTGCCTTGG CCGGTGTGTG GTTGTTGCGC CGGGCAGGGT AA
 
Protein sequence
MAKLDRYIGQ SVLLAILAVL GIILGLASLF AFIDEMGDLS DTYTVLEAGN FVLLTAPRRL 
YEMLPMAALI GCLIGLGSLA SSSELTIMRA AGVSIGRIVW AVMKPMLVLM LVGLLIGEYV
APVTENKAQA DRSLAQGGGE AQSSKRGMWH RQGEEYVHIN AVQPDGLLLG VTRYRFDSER
KIVTSSFARR AQYQNDHWLL ADVRTTYFRG DHTEVVNAPE ERWDVSLTPE LLNTVILAPE
SLSITGLWDY IHYLSDQGLN NSRYWLAFWT KVLQPMVTAA LVLMAISFIF GPLRSVTLGQ
RVFTGVLVGF VFRIGQDLLG PSSQVFGFPP LLAVVIPAGI CALAGVWLLR RAG