| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0795 |
|---|
| Symbol | |
|---|
| ID | 5192752 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 889584 |
|---|
| End bp | 891191 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640585255 |
|---|
| Product | response regulator receiver protein |
|---|
| Protein accession | YP_001266143 |
|---|
| Protein GI | 148546041 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.184844 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCAGT ACGGGCAAAA GAGCTTTCTG ATCGTCGACG ACTTTACCGA CTTTCGTACG
TCGACCCGTT CCATGTTGCG CGAGTTGGGC GTGCGCGACG TGGACACCGC TGACAGCGGC
GAGCAGGCGC TGCGCATGTG CGCGCAGAAG CGCTATGACT TCATCCTGCA GGACTTCCAT
CTGGGCGATG GCAAGAAGAA CGGGCAGCAG GTGCTTGAAG ACCTGATCAT CGACAAGCAC
ATCAGCCATG AGTGCGTGTT CATCATGGTC ACTGCCGAGA GCAGTCAGGC GATTGTCCTT
AGCGCCATCG AGCACGAGCC CGATGCCTAC CTGACCAAAC CGTTCAACCG GGTTGGCCTT
GCCCAGCGCG TCGAGAAACT GTTCCAGCGC AAGACGTTGC TAAAACCGAT CCTGCAGGCG
CTGGACCGCA ACCGTCCGGC CGAAGTACTG GCGGCCTGCG CCGAGCTGTG CAAGAAGGAT
CCGCGTCTGG CACCCTTGTG CTTGCGCTAC CGGGCCGATG CCCTGCGCAA CCTCAACCGT
TTCGAGGAAC TGGAAAAATT CCTCAAGGCC ATCCTGGCCA GCCGTCCGCA GCCGTGGGTA
TATGCCGCGT TGGGCGCACT GATGCACAAG CGTGGTCAGA ATGCCCAGGC CCAGGGTGTA
TACGAGCAGG CGCTCAAGGC GTTCCCGATC ATGCCAGGCC TTTACGATGG CATGGCCGAG
GTGCTGGTGG CGCAGGGTGA TACCCGGCGC GCGCAGAACT TGCTTGAAGA AGCCGTGCGC
CTGTCGCCTT TGTCGGTGCG TCGGCAGTCG ACGCTGGGCA AGCTGGCGCT GGAGAACGAA
GACTTCGAAA GCGCATCGAA GGCGTTCCGC CATGCGGTGA ACCAGGGGCA GAGTTCGCGC
TACAAGGATG CCGAAAACAA CCTTGGCCTG GTGCAGGCGT TGATGAGCAA GAATGCAGGC
TTCGGCCTGG ACGCCCGTAC CCGGGTCGAG ATCAACACCA CGCTCAGCGA AGTGGCCAAG
GAAAACCCCG AAGACCAAGG CCTGCAGGTG CGTGCGCGGA TGATGAAGGC TGCCAGCCTG
CAGCAGGCCG GCGACCCGGA AACGGCCGGC AAGCTGACAG AACAGGCGAT TCAGCGCCTG
GACAAGATGA ACCAGTTCTT CTCTGTCGAT TCGGCCCTGA CGGTCGCTGC GCAACTGCAG
GCGATGGGGC AGGAAGCCGC CGCCATCGGC GTGCTGAAGA ACTGCGTGGA AAGTTATGGC
GATGACCCCA AGGTCATGGA GAAAGTGGGC AAGCTGACGG ATGACCCCAG CGTGCTCAAC
GCCATTACCG AAGCGGTCAC CCTCAATCGG CAGGGTGTGC GCAGTTACCA GGGAGGGCAG
CTTGGCGAGG CGTTGCAACT GTTCCGAAAG GCATTGGGTT TACAGCCGAA GAACATCAGC
ATCGCCCTCA ATACCGCCCA GGCGCTGCTG CGCATCGGCG GTGACAACCC TCAGCCTGCG
ATCATGCAGG AGTGCCGCGA CGCCTTGACC AGCGTGGCCG GTATCCCTGC CAGCGACAAT
CGCTATGACC GTTACCGCAA ACTGCACATC CGAGTGTTCG GCGCATGA
|
|---|
| Protein sequence | MLQYGQKSFL IVDDFTDFRT STRSMLRELG VRDVDTADSG EQALRMCAQK RYDFILQDFH
LGDGKKNGQQ VLEDLIIDKH ISHECVFIMV TAESSQAIVL SAIEHEPDAY LTKPFNRVGL
AQRVEKLFQR KTLLKPILQA LDRNRPAEVL AACAELCKKD PRLAPLCLRY RADALRNLNR
FEELEKFLKA ILASRPQPWV YAALGALMHK RGQNAQAQGV YEQALKAFPI MPGLYDGMAE
VLVAQGDTRR AQNLLEEAVR LSPLSVRRQS TLGKLALENE DFESASKAFR HAVNQGQSSR
YKDAENNLGL VQALMSKNAG FGLDARTRVE INTTLSEVAK ENPEDQGLQV RARMMKAASL
QQAGDPETAG KLTEQAIQRL DKMNQFFSVD SALTVAAQLQ AMGQEAAAIG VLKNCVESYG
DDPKVMEKVG KLTDDPSVLN AITEAVTLNR QGVRSYQGGQ LGEALQLFRK ALGLQPKNIS
IALNTAQALL RIGGDNPQPA IMQECRDALT SVAGIPASDN RYDRYRKLHI RVFGA
|
|---|
| |