Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0345 |
Symbol | |
ID | 5193607 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 393951 |
End bp | 395201 |
Gene Length | 1251 bp |
Protein Length | 416 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640584791 |
Product | sarcosine oxidase beta subunit family protein |
Protein accession | YP_001265702 |
Protein GI | 148545600 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
TIGRFAM ID | [TIGR01373] sarcosine oxidase, beta subunit family, heterotetrameric form |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.538145 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACGTT ACTCGGGCTT CGGCCTTTTC AAGCACTCCC TCAGCCACCA CGAAAACTGG CAGCGCATGT GGCGCACGCC AACCCCTAAA AAGGTTTACG ACGTGGTCAT TGTCGGCGGT GGCGGTCATG GCCTGGCCAC GGCCTACTAC CTGGCCAAAG AGCACGGCAT CACCAACGTT GCCGTAATCG AGAAGGGCTA CCTGGGCGGC GGCAACACCG CCCGTAACAC CACCATCGTG CGTTCCAACT ACCTGTGGGA CGAGTCGGCG CACCTGTACG AGCACGCCAT GAAGCTGTGG GAGGGCCTGT CCCAGGACCT GAACTACAAC GTGATGTTCT CCCAGCGTGG CGTTTACAAC CTGTGCCACA CCCTGCAGGA CATGCGTGAC TCCGAGCGTC GGGTCAGTGC CAACCGCCTC AACGGCGTGG ATGGCGAGCT GCTGAACACC GCCCAGGTTG CGGCCGAAAT CCCGTACCTG GACTGCTCGA AGAACACCCG CTACCCGATC CTCGGCGCCA CCGTACAGCG CCGTGGCGGC GTTGCCCGTC ACGATGCCGT GGCCTGGGGC TTCGCCCGCG CTGCCGACGC CCTGGGCGTC GACCTGATCC AGCAAACCGA AGTGATCGGC TTCCGCAAGG AAAACGGCGC GGTCATCGGT GTTGAAACCA ACAAAGGCTT CATCGGCGCC AAGCGCGTCG GCGTGGTCAC CGCCGGTAAC TCCGGGCACA TGGCCAAGCT GGCCGGCTTC CGCCTGCCGC TGGAATCGCA CCCGCTCCAA GCGCTGGTAT CCGAGCCGAT CAAGCCGATC ATCGACAGCG TGATCATGTC CAACGCCGTA CACGGCTACA TCAGCCAGTC CGACAAGGGC GACCTGGTGA TCGGTGCCGG TATCGACGGC TGGGTCGGCT ACGGCCAGCG CGGTTCGTAC CCGGTGATCG AGCACACCCT GCAGGCCATC GTCGAGATGT TCCCCAACCT GTCGCGTGTT CGCATGAACC GCCAGTGGGG CGGCATCGTA GACACCTCGC CGGACGCCTG CCCGATCATC ACCAAAACCC CGGTCAAGAA CATGTTCTTC AACTGCGGTT GGGGTACTGG CGGCTTCAAG GCGACCCCCG GTTCGGGCAA CGTCTTCGCC GCGAGCCTGG CCAAGGGCGA AATGCACCCA CTGGCCGCGC CGTTCTCCAT GGACCGTTTC TACAACGGCG CACTGATCGA CGAACACGGC GCCGCCGCCG TCGCCCACTA A
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Protein sequence | MQRYSGFGLF KHSLSHHENW QRMWRTPTPK KVYDVVIVGG GGHGLATAYY LAKEHGITNV AVIEKGYLGG GNTARNTTIV RSNYLWDESA HLYEHAMKLW EGLSQDLNYN VMFSQRGVYN LCHTLQDMRD SERRVSANRL NGVDGELLNT AQVAAEIPYL DCSKNTRYPI LGATVQRRGG VARHDAVAWG FARAADALGV DLIQQTEVIG FRKENGAVIG VETNKGFIGA KRVGVVTAGN SGHMAKLAGF RLPLESHPLQ ALVSEPIKPI IDSVIMSNAV HGYISQSDKG DLVIGAGIDG WVGYGQRGSY PVIEHTLQAI VEMFPNLSRV RMNRQWGGIV DTSPDACPII TKTPVKNMFF NCGWGTGGFK ATPGSGNVFA ASLAKGEMHP LAAPFSMDRF YNGALIDEHG AAAVAH
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