| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0302 |
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| Symbol | |
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| ID | 5190625 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 345349 |
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| End bp | 346734 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640584747 |
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| Product | GABA permease |
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| Protein accession | YP_001265659 |
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| Protein GI | 148545557 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
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| TIGRFAM ID | [TIGR01773] gamma-aminobutyrate permease |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0415765 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGGTA ACAATTCCAA TGACCTCGCT CAGGGGCTCA AACAACGGCA TGTGACCATG
CTGTCCATCG CTGGCGTCAT CGGTGCCGGC CTGTTCGTAG GCTCCGGCCA CGCCATCGCA
GCTGCCGGCC CTGCTGTGCT GCTGGCTTAC GCTGCCGCCG GTACGCTGGT CGTGCTGGTC
ATGCGTATGC TGGGTGAAAT GGCAGTCGCC TCGCCTGACA CCGGTTCGTT CTCTACGTAT
GCCGACCGTG CCATCGGGCG CTGGGCCGGT TTCACCATCG GCTGGCTGTA CTGGTGGTTC
TGGGTGTTGG TAATTCCGCT GGAGGCCAAT GCCGCCGCGG CCATTCTGCA TGCCTGGTTC
CCGGCGGTTG ACCTGTGGGC GTTCTCCCTC ATCATTACCC TGGCACTGAC ACTCACCAAC
CTGTGCAGCG TGAAGAACTA CGGTGAGTTC GAGTTCTGGT TTGCCCTGCT CAAAGTGCTG
GCGATCATCG GCTTCATCGC CGTGGGCTGT GCTGCCTTGT TCGGCTTTGT ACCGAGCAGC
CAGGTGAGCG GTGCCAGCCA CCTGTTCGAT ACCCAAGGCT TCATGCCCAA CGGCCTGGGC
GCAGTGCTGG CAGCCATGCT GACCACCATG TTCTCGTTCA TGGGTACCGA AATCGTCACC
ATCGCCGCTG CCGAGTCGAA GGACCCAGGC AAGCAGATCA GCCGTGCCAC CAACTCGGTA
ATCTGGCGTA TCTGCCTGTT CTACCTGGTG TCGATCTTCC TGGTCGTGGC CCTGGTGCCG
TGGAACGACC CGGCCCTGGC CGAGACGGGC TCCTACCAGA CCGTGCTGAG CCGTATTGGT
GTGCCGAATG CCAAGCTGAT CGTCGACATT GTTGTGCTGA TTGCCGTGAC CAGCTGCCTG
AACTCGGCGC TGTACACTTC TTCGCGTATG TTGTTCTCGC TGAGCAAGCG TGGCGACGCC
CCGGCCATCG CCCAACGCAC CACCAAGGCG GCGACCCCGC ACGTGGCGGT ACTGCTGTCC
ACCGCAGCGG CATTCCTTTG CGTGTTCGCC AACTTCGTGG CACCGGCCCA GGTGTTCGAG
TTCCTGCTGG CCAGCTCTGG CGCCATCGCG CTGCTGGTGT ACCTGGTGAT TGCCGTGTCG
CAGCTGCGCA TGCGCGCCCA GCGTGAAGCC CGCGGCGAGA AGATCACCTT CAAGATGTGG
CTGTTCCCGG GCCTGACCTG GGCGACCATT GCCTTCATCG TTGCCATTCT GGTGGTGATG
GCGCTGCGTG AGGATCACCG TGCGGAGATC ATTGCGACTG CGTTGCTGAG TATTGGTGTG
GTGGCGGCTG GCTTGCTGGT GCACCGCAAG CGCGAGGCTG CCGGGCGGGC GGCGCTGGAC
AGCTGA
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| Protein sequence | MSGNNSNDLA QGLKQRHVTM LSIAGVIGAG LFVGSGHAIA AAGPAVLLAY AAAGTLVVLV
MRMLGEMAVA SPDTGSFSTY ADRAIGRWAG FTIGWLYWWF WVLVIPLEAN AAAAILHAWF
PAVDLWAFSL IITLALTLTN LCSVKNYGEF EFWFALLKVL AIIGFIAVGC AALFGFVPSS
QVSGASHLFD TQGFMPNGLG AVLAAMLTTM FSFMGTEIVT IAAAESKDPG KQISRATNSV
IWRICLFYLV SIFLVVALVP WNDPALAETG SYQTVLSRIG VPNAKLIVDI VVLIAVTSCL
NSALYTSSRM LFSLSKRGDA PAIAQRTTKA ATPHVAVLLS TAAAFLCVFA NFVAPAQVFE
FLLASSGAIA LLVYLVIAVS QLRMRAQREA RGEKITFKMW LFPGLTWATI AFIVAILVVM
ALREDHRAEI IATALLSIGV VAAGLLVHRK REAAGRAALD S
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